chr2.LjT24P12.40.nd (Lotus japonicus)
CCCH ZF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00642 (zf-CCCH) IPR000571 chr2.LjT24P12.40.nd T05996_0.6 Superfamily (2011-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
chr2.LjT24P12.40.nd CCCH ZF 29 55
chr2.LjT24P12.40.nd CCCH ZF 72 97
chr2.LjT24P12.40.nd CCCH ZF 116 142
chr2.LjT24P12.40.nd CCCH ZF 253 279
chr2.LjT24P12.40.nd CCCH ZF 296 322

Links

Other CCCH ZF family RBPs
Other Lotus japonicus RBPs

20 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
XM_002892212.1 Arabidopsis lyrata Al_scaffold_0001_429 N 0.761
XM_002881207.1 Arabidopsis lyrata fgenesh1_pg.C_scaffold_4001392 N 0.701
AT1G04990 Arabidopsis thaliana AT1G04990-TAIR-G N 0.769
PK02694.1 Cannabis sativa PK02694.1 N 0.828
Cucsa.336220 Cucumis sativus Cucsa.336220 N 0.828
Glyma14g05460.1 Glycine max Glyma14g05460.1 N 0.918
Glyma02g43510.1 Glycine max Glyma02g43510.1 N 0.925
MDP0000243257 Malus x domestica MDP0000243257 N 0.836
MDP0000285251 Malus x domestica MDP0000285251 N 0.828
MDP0000804620 Malus x domestica MDP0000804620 N 0.836
cassava11170.m1 Manihot esculenta cassava11170.m1 N 0.813
cassava35635.valid.m1 Manihot esculenta cassava35635.valid.m1 N 0.836
Medtr5g092550 Medicago truncatula Medtr5g092550 N 0.933
mgf004255m Mimulus guttatus mgf004255m N 0.799
gw1.102.25.1 Physcomitrella patens gw1.102.25.1 N 0.716
B9GTS9_POPTR Populus trichocarpa POPTR_0002s21790 N 0.813
B9IAL1_POPTR Populus trichocarpa POPTR_0014s15770 N 0.813
ppa005469m Prunus persica ppa005469m N 0.851
29620.m000559 Ricinus communis 29620.m000559 N 0.836
GSVIVG00030514001 Vitis vinifera GSVIVG00030514001 N 0.858