XP_002493509.1 (Pichia pastoris)
CCCH ZF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00642 (zf-CCCH) IPR000571 XP_002493509.1 T06651_0.6 Superfamily (2011-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
XP_002493509.1 CCCH ZF 120 144
XP_002493509.1 CCCH ZF 149 171

Links

Other CCCH ZF family RBPs
Other Pichia pastoris RBPs

31 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
AB08315.1 Alternaria brassicicola AB08315.1 N 0.720
ADR062W Ashbya gossypii ADR062W N 0.760
orf19.7385 Candida albicans orf19.7385 N 0.750
Cd36_85970 Candida dubliniensis Cd36_85970 N 0.792
CLUG_02022 Candida lusitaniae CLUG_02022 N 0.735
CTRG_02259 Candida tropicalis CTRG_02259 N 0.735
CHGG_00049 Chaetomium globosum CHGG_00049 N 0.700
estExt_fgenesh1_pg.C_160206 Cochliobolus heterostrophus C5 estExt_fgenesh1_pg.C_160206 N 0.720
GLRG_01727 Colletotrichum graminicola GLRG_01727 N 0.700
DEHA0D17303g Debaryomyces hansenii DEHA0D17303g N 0.792
FOXG_04082 Fusarium oxysporum FOXG_04082 N 0.729
FVEG_07196 Fusarium verticillioides FVEG_07196 N 0.729
KLLA0B09878g Kluyveromyces lactis KLLA0B09878g N 0.700
SAKL0H10846g Lachancea kluyveri SAKL0H10846g N 0.760
estExt_fgenesh1_kg.C_60003 Myceliophthora thermophila estExt_fgenesh1_kg.C_60003 N 0.720
gw1.28.197.1 Nectria haematococca gw1.28.197.1 N 0.700
NCU05007 Neurospora crassa NCU05007 N 0.720
estExt_Genewise1Plus.C_130028 Neurospora discreta estExt_Genewise1Plus.C_130028 N 0.720
estExt_Genewise1.C_110035 Neurospora tetrasperma estExt_Genewise1.C_110035 N 0.720
EAT89389.2 Phaeosphaeria nodorum EAT89389.2 N 0.720
e_gwh1.2.1.2495.1 Pichia stipitis e_gwh1.2.1.2495.1 N 0.771
Pa_5_7490 Podospora anserina Pa_5_7490 N 0.700
PTRG_01963 Pyrenophora tritici repentis PTRG_01963 N 0.720
SJAG_03191 Schizosaccharomyces japonicus SJAG_03191 N 0.700
SNOG_02658 Stagonospora nodorum SNOG_02658 N 0.720
estExt_Genewise1.C_60695 Trichoderma atroviride estExt_Genewise1.C_60695 N 0.700
estExt_fgenesh5_pg.C_100355 Trichoderma reesei estExt_fgenesh5_pg.C_100355 N 0.700
e_gw1.29.29.1 Trichoderma virens e_gw1.29.29.1 N 0.700
VDBG_09822 Verticillium albo atrum VDBG_09822 N 0.750
VDAG_09556 Verticillium dahliae VDAG_09556 N 0.750
YALI0B12540g Yarrowia lipolytica YALI0B12540g N 0.796