CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
Home
Tools
Download cart
Bulk downloads
Database stats
Contact us
Help
How to cite
ENSCSAVG00000003053
(
Ciona savignyi
)
CSD
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00313 (CSD)
IPR002059
ENSCSAVG00000003053
T16805_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
YB-1
M111_0.6
Homo sapiens
AACAUCD
RNAcompete
Ray et al.(2013)
RNCMPT00116
0.833
YB-1
M081_0.6
Homo sapiens
AACAUC
RNAcompete
Ray et al.(2013)
RNCMPT00083
0.833
ybx2-a
M260_0.6
Xenopus laevis
GCCANACCAYCGC
SELEX
Cook et al.(2011)
130_11376140
0.808
ybx2-a
M254_0.6
Xenopus laevis
KAACAUCU
SELEX
Cook et al.(2011)
115_7499328
0.808
ybx2-a
M250_0.6
Xenopus laevis
UAACAUC
SELEX
Cook et al.(2011)
114_7499328
0.808
YBX2
M082_0.6
Homo sapiens
AACAWCD
RNAcompete
Ray et al.(2013)
RNCMPT00084
0.781
For this family, RBPs with RBD identity >
0.7
will likely have a similar motif
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSCSAVP00000005110
CSD
25
96
QCSGTVKWFNVRNGYGFVNRDDNKEDVFIHQTAIIKNNPKKYLRSVGDGEQVEFDVVEGEKGLPEAANVTGP
ENSCSAVP00000005111
CSD
25
96
QCSGTVKWFNVRNGYGFVNRDDNKEDVFIHQTAIIKNNPKKYLRSVGDGEQVEFDVVEGEKGLPEAANVTGP
Links
Other
CSD
family RBPs
Other
Ciona savignyi
RBPs
177 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
Ame_R008203
Ailuropoda melanoleuca
Ame_R008203
N
0.000
D7F2U6_ANOCA
Anolis carolinensis
ENSACAG00000000741
N
0.000
PRGC1_BOVIN
Bos taurus
ENSBTAG00000017024
N
0.000
PPARGC1A
Callithrix jacchus
ENSCJAG00000013024
N
0.000
PPARGC1A
Canis familiaris
ENSCAFG00000016519
N
0.000
PPARGC1A
Cavia porcellus
ENSCPOG00000001518
N
0.000
PPARGC1A
Dasypus novemcinctus
ENSDNOG00000012977
N
0.000
Ppargc1a
Dipodomys ordii
ENSDORG00000016276
N
0.000
LOC100055716
Equus caballus
ENSECAG00000009164
N
0.000
PPARGC1A
Erinaceus europaeus
ENSEEUG00000009219
N
0.000
Q60GU0_CHICK
Gallus gallus
ENSGALG00000014398
N
0.000
PPARGC1A
Gorilla gorilla
ENSGGOG00000009810
N
0.000
PPARGC1A
Homo sapiens
ENSG00000109819
N
0.000
PPARGC1A
Loxodonta africana
ENSLAFG00000012981
N
0.000
PPARGC1A
Macaca mulatta
ENSMMUG00000001844
N
0.000
PPARGC1A
Meleagris gallopavo
ENSMGAG00000012485
N
0.000
PPARGC1A
Monodelphis domestica
ENSMODG00000000549
N
0.000
Ppargc1a
Mus musculus
ENSMUSG00000029167
N
0.000
PPARGC1A
Myotis lucifugus
ENSMLUG00000016307
N
0.000
PPARGC1A
Ochotona princeps
ENSOPRG00000012899
N
0.000
PPARGC1A
Ornithorhynchus anatinus
ENSOANG00000006680
N
0.000
PPARGC1A
Oryctolagus cuniculus
ENSOCUG00000014668
N
0.000
PPARGC1A
Oryzias latipes
ENSORLG00000004788
N
0.000
ENSPPYG00000014640
Pongo pygmaeus
ENSPPYG00000014640
N
0.000
PPARGC1A
Procavia capensis
ENSPCAG00000016308
N
0.000
PPARGC1A
Pteropus vampyrus
ENSPVAG00000004965
N
0.000
Ppargc1a
Rattus norvegicus
ENSRNOG00000004473
N
0.000
PPARGC1A
Sorex araneus
ENSSARG00000000575
N
0.000
Q6R2I4_SPETR
Spermophilus tridecemlineatus
ENSSTOG00000012522
N
0.000
Q3Y595_FUGRU
Takifugu rubripes
ENSTRUG00000007210
N
0.000
PPARGC1A
Tetraodon nigroviridis
ENSTNIG00000002174
N
0.000
PPARGC1A
Tursiops truncatus
ENSTTRG00000005327
N
0.000
PPARGC1A
Vicugna pacos
ENSVPAG00000003478
N
0.000