ENSCSAVG00000003053 (Ciona savignyi)
CSD

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00313 (CSD) IPR002059 ENSCSAVG00000003053 T16805_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
YB-1
M111_0.6 		Homo sapiens AACAUCD RNAcompete
Ray et al.(2013)
RNCMPT00116 		0.833
YB-1
M081_0.6 		Homo sapiens AACAUC RNAcompete
Ray et al.(2013)
RNCMPT00083 		0.833
ybx2-a
M260_0.6 		Xenopus laevis GCCANACCAYCGC SELEX
Cook et al.(2011)
130_11376140 		0.808
ybx2-a
M254_0.6 		Xenopus laevis KAACAUCU SELEX
Cook et al.(2011)
115_7499328 		0.808
ybx2-a
M250_0.6 		Xenopus laevis UAACAUC SELEX
Cook et al.(2011)
114_7499328 		0.808
YBX2
M082_0.6 		Homo sapiens AACAWCD RNAcompete
Ray et al.(2013)
RNCMPT00084 		0.781
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSCSAVP00000005110 CSD 25 96
ENSCSAVP00000005111 CSD 25 96

Links

Other CSD family RBPs
Other Ciona savignyi RBPs

177 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
DGIL_AUG5s15730g8t2 Acyrtosiphon pisum DGIL_AUG5s15730g8t2 I 0.764
AAEL001375 Aedes aegypti AAEL001375 I 0.722
Ame_R019916 Ailuropoda melanoleuca Ame_R019916 I 0.708
Aqu1.220698 Amphimedon queenslandica Aqu1.220698 I 0.750
AGAP006108 Anopheles gambiae AGAP006108 I 0.736
amel4_ncbi_hmm3751 Apis mellifera amel4_ncbi_hmm3751 I 0.750
amel4_ncbi_hmm4087 Apis mellifera amel4_ncbi_hmm4087 I 0.750
BGIBMGA000526 Bombyx mori BGIBMGA000526 I 0.736
YBOX1_BOVIN Bos taurus ENSBTAG00000017368 I 0.808
A5D7Q4_BOVIN Bos taurus ENSBTAG00000009663 I 0.808
ENSBTAG00000006133 Bos taurus ENSBTAG00000006133 I 0.781
A5D7M4_BOVIN Bos taurus ENSBTAG00000009126 I 0.795
e_gw.440.24.1 Branchiostoma floridae e_gw.440.24.1 I 0.822
Bm1_57515 Brugia malayi Bm1_57515 I 0.736
CBN16711 Caenorhabditis brenneri CBN16711 I 0.722
CBG02981 Caenorhabditis briggsae CBG02981 I 0.708
cey-1 Caenorhabditis elegans F33A8.3 I 0.722
CRE01789 Caenorhabditis remanei CRE01789 I 0.722
ENSCJAG00000033824 Callithrix jacchus ENSCJAG00000033824 I 0.750
ENSCJAG00000031567 Callithrix jacchus ENSCJAG00000031567 I 0.722
ENSCJAG00000035120 Callithrix jacchus ENSCJAG00000035120 I 0.740
ENSCJAG00000018832 Callithrix jacchus ENSCJAG00000018832 I 0.750
ENSCJAG00000010572 Callithrix jacchus ENSCJAG00000010572 I 0.795
ENSCJAG00000007407 Callithrix jacchus ENSCJAG00000007407 I 0.750
LOC100401646 Callithrix jacchus ENSCJAG00000003155 I 0.808
ENSCJAG00000032211 Callithrix jacchus ENSCJAG00000032211 I 0.767
ENSCJAG00000000083 Callithrix jacchus ENSCJAG00000000083 I 0.708
LOC100396927 Callithrix jacchus ENSCJAG00000021660 I 0.808
LOC100403904 Callithrix jacchus ENSCJAG00000016581 I 0.781
ENSCAFG00000002541 Canis familiaris ENSCAFG00000002541 I 0.808
ENSCAFG00000005471 Canis familiaris ENSCAFG00000005471 I 0.730
XP_856029.1 Canis familiaris ENSCAFG00000010117 I 0.808
Q9N1Q2_CANFA Canis familiaris ENSCAFG00000013401 I 0.808
YBX2 Canis familiaris ENSCAFG00000016128 I 0.795
ENSCAFG00000000872 Canis familiaris ENSCAFG00000000872 I 0.795
XM_549034.2 Canis familiaris ENSCAFG00000016523 I 0.722
ENSCAFG00000016520 Canis familiaris ENSCAFG00000016520 I 0.722
ENSCAFG00000007977 Canis familiaris ENSCAFG00000007977 I 0.708
gw1.1098.8.1 Capitella teleta gw1.1098.8.1 I 0.708
gw1.367.31.1 Capitella teleta gw1.367.31.1 I 0.736
gw1.4.101.1 Capitella teleta gw1.4.101.1 I 0.736
gw1.93.56.1 Capitella teleta gw1.93.56.1 I 0.736
gw1.11296.2.1 Capitella teleta gw1.11296.2.1 I 0.764
e_gw1.9027.2.1 Capitella teleta e_gw1.9027.2.1 I 0.736
e_gw1.21.99.1 Capitella teleta e_gw1.21.99.1 I 0.750
estExt_Genewise1Plus.C_1630040 Capitella teleta estExt_Genewise1Plus.C_1630040 I 0.819
CSDA Cavia porcellus ENSCPOG00000011329 I 0.808
YBX2 Cavia porcellus ENSCPOG00000009543 I 0.795
ENSCPOG00000010888 Cavia porcellus ENSCPOG00000010888 I 0.808
CSDA Choloepus hoffmanni ENSCHOG00000011988 I 0.808
Q4H2L7_CIOIN Ciona intestinalis ENSCING00000010654 I 0.958
ybx1 Danio rerio ENSDARG00000004757 I 0.808
NCBI_GNO_0300554 Daphnia pulex NCBI_GNO_0300554 I 0.722
Csda Dipodomys ordii ENSDORG00000009103 I 0.808
GF10852 Drosophila ananassae FBgn0087892 I 0.750
GH16919 Drosophila grimshawi FBgn0124390 I 0.750
yps Drosophila melanogaster FBgn0022959 I 0.736
GI13673 Drosophila mojavensis FBgn0136428 I 0.750
GL15684 Drosophila persimilis FBgn0153288 I 0.750
GA23502-RA Drosophila pseudoobscura FBgn0244903 I 0.750
GM24682 Drosophila sechellia FBgn0179545 I 0.736
GD12750 Drosophila simulans FBgn0184477 I 0.736
GJ14010 Drosophila virilis FBgn0201228 I 0.750
GK16710 Drosophila willistoni FBgn0218712 I 0.750
GE20150 Drosophila yakuba FBgn0237472 I 0.736
CSDA Echinops telfairi ENSETEG00000002557 I 0.808
LOC100065107 Equus caballus ENSECAG00000013777 I 0.808
LOC100067336 Equus caballus ENSECAG00000023592 I 0.808
LOC100072964 Equus caballus ENSECAG00000009996 I 0.795
ENSECAG00000008961 Equus caballus ENSECAG00000008961 I 0.808
ENSECAG00000011356 Equus caballus ENSECAG00000011356 I 0.795
CSDA Erinaceus europaeus ENSEEUG00000010415 I 0.808
ENSEEUG00000007494 Erinaceus europaeus ENSEEUG00000007494 I 0.767
ENSEEUG00000005657 Erinaceus europaeus ENSEEUG00000005657 I 0.808
ENSGALG00000018512 Gallus gallus ENSGALG00000018512 I 0.808
YBOX1_CHICK Gallus gallus ENSGALG00000004848 I 0.808
ENSGACG00000019392 Gasterosteus aculeatus ENSGACG00000019392 I 0.767
YBX1 Gasterosteus aculeatus ENSGACG00000006447 I 0.808
YBX2 Gorilla gorilla ENSGGOG00000007399 I 0.781
ENSGGOG00000023581 Gorilla gorilla ENSGGOG00000023581 I 0.781
CSDA Gorilla gorilla ENSGGOG00000001352 I 0.808
133388 Helobdella robusta 133388 I 0.708
YB-1 Homo sapiens ENSG00000065978 D 0.808
CSDA Homo sapiens ENSG00000060138 I 0.808
YBX2 Homo sapiens ENSG00000006047 D 0.781
XP_002154000.1 Hydra magnipapillata XP_002154000.1 I 0.778
XP_002159745.1 Hydra magnipapillata XP_002159745.1 I 0.778
ISCW005281 Ixodes scapularis ISCW005281 I 0.722
gw1.79.157.1 Lottia gigantea gw1.79.157.1 I 0.833
CSDA Loxodonta africana ENSLAFG00000017247 I 0.808
YBX2 Loxodonta africana ENSLAFG00000014006 I 0.795
YBX1 Loxodonta africana ENSLAFG00000007597 I 0.808
ENSMMUG00000032563 Macaca mulatta ENSMMUG00000032563 I 0.795
YBX2 Macaca mulatta ENSMMUG00000022712 I 0.781
CSDA Macaca mulatta ENSMMUG00000022469 I 0.808
ENSMMUG00000013136 Macaca mulatta ENSMMUG00000013136 I 0.808
YBX1 Meleagris gallopavo ENSMGAG00000006879 I 0.808
YBX1 Microcebus murinus ENSMICG00000014984 I 0.808
YBX2 Monodelphis domestica ENSMODG00000017596 I 0.781
ENSMODG00000022963 Monodelphis domestica ENSMODG00000022963 I 0.822
YBX1 Monodelphis domestica ENSMODG00000017214 I 0.808
CSDA Monodelphis domestica ENSMODG00000018248 I 0.808
Ybx1 Mus musculus ENSMUSG00000028639 I 0.808
Ybx2 Mus musculus ENSMUSG00000018554 I 0.795
Csda Mus musculus ENSMUSG00000030189 I 0.808
CSDA Myotis lucifugus ENSMLUG00000007476 I 0.808
ENSMLUG00000004747 Myotis lucifugus ENSMLUG00000004747 I 0.781
YBX2 Myotis lucifugus ENSMLUG00000004686 I 0.778
ENSMLUG00000003812 Myotis lucifugus ENSMLUG00000003812 I 0.736
e_gw.71.100.1 Nematostella vectensis e_gw.71.100.1 I 0.806
YBX1 Ochotona princeps ENSOPRG00000008050 I 0.722
YBX2 Ochotona princeps ENSOPRG00000013773 I 0.795
SNAPOd2T00011389001 Oikopleura dioica SNAPOd2T00011389001 I 0.778
YBX1 Ornithorhynchus anatinus ENSOANG00000011725 I 0.808
ENSOANG00000001663 Ornithorhynchus anatinus ENSOANG00000001663 I 0.808
Q8AXS2_ORYLA Oryzias latipes ENSORLG00000004225 I 0.808
Q90WH1_ORYLA Oryzias latipes ENSORLG00000006269 I 0.767
CSDA Otolemur garnettii ENSOGAG00000013245 I 0.722
CSDA Pan troglodytes ENSPTRG00000004681 I 0.808
XR_022686.1 Pan troglodytes ENSPTRG00000008673 I 0.781
XR_021659.1 Pan troglodytes ENSPTRG00000000615 I 0.808
PHUM156720 Pediculus humanus PHUM156720 I 0.750
PHUM156710 Pediculus humanus PHUM156710 I 0.792
ENSPPYG00000004279 Pongo pygmaeus ENSPPYG00000004279 I 0.808
Ppa-cey-1 Pristionchus pacificus PPA28011 I 0.736
CSDA Procavia capensis ENSPCAG00000001397 I 0.740
YBX2 Procavia capensis ENSPCAG00000008019 I 0.795
YBX1 Pteropus vampyrus ENSPVAG00000005504 I 0.808
CSDA Pteropus vampyrus ENSPVAG00000006740 I 0.808
Csda Rattus norvegicus ENSRNOG00000005480 I 0.808
Ybx1 Rattus norvegicus ENSRNOG00000032902 I 0.753
ENSRNOG00000043268 Rattus norvegicus ENSRNOG00000043268 I 0.764
YBOX1_RAT Rattus norvegicus ENSRNOG00000030807 I 0.808
ENSRNOG00000023786 Rattus norvegicus ENSRNOG00000023786 I 0.795
Ybx2 Rattus norvegicus ENSRNOG00000017117 I 0.795
ENSRNOG00000006596 Rattus norvegicus ENSRNOG00000006596 I 0.795
YBX2 Sorex araneus ENSSARG00000000488 I 0.781
ENSSTOG00000000116 Spermophilus tridecemlineatus ENSSTOG00000000116 I 0.808
XP_001178393.1 Strongylocentrotus purpuratus XP_001178393.1 I 0.778
XP_785816.1 Strongylocentrotus purpuratus XP_785816.1 I 0.778
ENSSSCG00000008860 Sus scrofa ENSSSCG00000008860 I 0.767
CSDA Sus scrofa ENSSSCG00000000633 I 0.808
ENSSSCG00000015308 Sus scrofa ENSSSCG00000015308 I 0.722
YBX2 Sus scrofa ENSSSCG00000017938 I 0.795
CSDA Taeniopygia guttata ENSTGUG00000012047 I 0.808
YBX1 Taeniopygia guttata ENSTGUG00000017262 I 0.808
ENSTRUG00000011813 Takifugu rubripes ENSTRUG00000011813 I 0.753
Q90WH2_FUGRU Takifugu rubripes ENSTRUG00000015333 I 0.808
YBX1 Tarsius syrichta ENSTSYG00000006915 I 0.708
YBX1 Tetraodon nigroviridis ENSTNIG00000011989 I 0.808
ENSTNIG00000010139 Tetraodon nigroviridis ENSTNIG00000010139 I 0.753
amel4_ncbi_hmm3751 Tribolium castaneum amel4_ncbi_hmm3751 I 0.750
estExt_fgeneshTA2_pg.C_60554 Trichoplax adhaerens estExt_fgeneshTA2_pg.C_60554 I 0.750
YBX2 Tupaia belangeri ENSTBEG00000001266 I 0.795
CSDA Tupaia belangeri ENSTBEG00000012570 I 0.808
YBX1 Tursiops truncatus ENSTTRG00000001353 I 0.736
YBX1 Vicugna pacos ENSVPAG00000000068 I 0.808
WUBG_03960 Wuchereria bancrofti WUBG_03960 I 0.736
AAI55915 Xenopus laevis AAI55915 I 0.808
AAI69704 Xenopus laevis AAI69704 I 0.808
ybx2-a Xenopus laevis AAI69706 D 0.808
CAA42778 Xenopus laevis CAA42778 I 0.808
P21573 Xenopus laevis P21573 I 0.808
P45441 Xenopus laevis P45441 I 0.808
P21574 Xenopus laevis P21574 I 0.808
AAI55914 Xenopus laevis AAI55914 I 0.808
AAI30161 Xenopus laevis AAI30161 I 0.808
AAI06324 Xenopus laevis AAI06324 I 0.808
AAH42217 Xenopus laevis AAH42217 I 0.808
AAH41191 Xenopus laevis AAH41191 I 0.808
AAA49924 Xenopus laevis AAA49924 I 0.808
AAA49716 Xenopus laevis AAA49716 I 0.808
AAA49715 Xenopus laevis AAA49715 I 0.808
Q00436 Xenopus laevis Q00436 I 0.808
csda Xenopus tropicalis ENSXETG00000016239 I 0.795
ybx1 Xenopus tropicalis ENSXETG00000013436 I 0.808