ENSCSAVG00000003053 (Ciona savignyi)
CSD

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00313 (CSD) IPR002059 ENSCSAVG00000003053 T16805_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
YB-1
M111_0.6 		Homo sapiens AACAUCD RNAcompete
Ray et al.(2013)
RNCMPT00116 		0.833
YB-1
M081_0.6 		Homo sapiens AACAUC RNAcompete
Ray et al.(2013)
RNCMPT00083 		0.833
ybx2-a
M260_0.6 		Xenopus laevis GCCANACCAYCGC SELEX
Cook et al.(2011)
130_11376140 		0.808
ybx2-a
M254_0.6 		Xenopus laevis KAACAUCU SELEX
Cook et al.(2011)
115_7499328 		0.808
ybx2-a
M250_0.6 		Xenopus laevis UAACAUC SELEX
Cook et al.(2011)
114_7499328 		0.808
YBX2
M082_0.6 		Homo sapiens AACAWCD RNAcompete
Ray et al.(2013)
RNCMPT00084 		0.781
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSCSAVP00000005110 CSD 25 96
ENSCSAVP00000005111 CSD 25 96

Links

Other CSD family RBPs
Other Ciona savignyi RBPs

177 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
Ame_R008203 Ailuropoda melanoleuca Ame_R008203 N 0.000
D7F2U6_ANOCA Anolis carolinensis ENSACAG00000000741 N 0.000
PRGC1_BOVIN Bos taurus ENSBTAG00000017024 N 0.000
PPARGC1A Callithrix jacchus ENSCJAG00000013024 N 0.000
PPARGC1A Canis familiaris ENSCAFG00000016519 N 0.000
PPARGC1A Cavia porcellus ENSCPOG00000001518 N 0.000
PPARGC1A Dasypus novemcinctus ENSDNOG00000012977 N 0.000
Ppargc1a Dipodomys ordii ENSDORG00000016276 N 0.000
LOC100055716 Equus caballus ENSECAG00000009164 N 0.000
PPARGC1A Erinaceus europaeus ENSEEUG00000009219 N 0.000
Q60GU0_CHICK Gallus gallus ENSGALG00000014398 N 0.000
PPARGC1A Gorilla gorilla ENSGGOG00000009810 N 0.000
PPARGC1A Homo sapiens ENSG00000109819 N 0.000
PPARGC1A Loxodonta africana ENSLAFG00000012981 N 0.000
PPARGC1A Macaca mulatta ENSMMUG00000001844 N 0.000
PPARGC1A Meleagris gallopavo ENSMGAG00000012485 N 0.000
PPARGC1A Monodelphis domestica ENSMODG00000000549 N 0.000
Ppargc1a Mus musculus ENSMUSG00000029167 N 0.000
PPARGC1A Myotis lucifugus ENSMLUG00000016307 N 0.000
PPARGC1A Ochotona princeps ENSOPRG00000012899 N 0.000
PPARGC1A Ornithorhynchus anatinus ENSOANG00000006680 N 0.000
PPARGC1A Oryctolagus cuniculus ENSOCUG00000014668 N 0.000
PPARGC1A Oryzias latipes ENSORLG00000004788 N 0.000
ENSPPYG00000014640 Pongo pygmaeus ENSPPYG00000014640 N 0.000
PPARGC1A Procavia capensis ENSPCAG00000016308 N 0.000
PPARGC1A Pteropus vampyrus ENSPVAG00000004965 N 0.000
Ppargc1a Rattus norvegicus ENSRNOG00000004473 N 0.000
PPARGC1A Sorex araneus ENSSARG00000000575 N 0.000
Q6R2I4_SPETR Spermophilus tridecemlineatus ENSSTOG00000012522 N 0.000
Q3Y595_FUGRU Takifugu rubripes ENSTRUG00000007210 N 0.000
PPARGC1A Tetraodon nigroviridis ENSTNIG00000002174 N 0.000
PPARGC1A Tursiops truncatus ENSTTRG00000005327 N 0.000
PPARGC1A Vicugna pacos ENSVPAG00000003478 N 0.000