XM_547294.2 (Canis familiaris)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSCAFG00000003095 T35000_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
Fusip1
M088_0.6 		Homo sapiens AGAGAVV RNAcompete
Ray et al.(2013)
RNCMPT00090 		0.958
Fusip1
M087_0.6 		Homo sapiens AGAGARR RNAcompete
Ray et al.(2013)
RNCMPT00089 		0.958
Fusip1
M086_0.6 		Homo sapiens ARAGRRR RNAcompete
Ray et al.(2013)
RNCMPT00088 		0.958
Fusip1
M019_0.6 		Homo sapiens AGAGAVM RNAcompete
Ray et al.(2013)
RNCMPT00019 		0.958
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSCAFP00000004604 RRM 18 88

Links

Other RRM family RBPs
Other Canis familiaris RBPs

65 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
Ame_R019011 Ailuropoda melanoleuca Ame_R019011 I 0.736
ENSACAG00000005327 Anolis carolinensis ENSACAG00000005327 I 0.833
Q3ZBU5_BOVIN Bos taurus ENSBTAG00000008072 I 0.958
ENSCJAG00000007019 Callithrix jacchus ENSCJAG00000007019 I 0.847
ENSCJAG00000021801 Callithrix jacchus ENSCJAG00000021801 I 0.875
LOC100387136 Callithrix jacchus ENSCJAG00000020883 I 0.958
ENSCJAG00000010608 Callithrix jacchus ENSCJAG00000010608 I 0.875
ENSCJAG00000002933 Callithrix jacchus ENSCJAG00000002933 I 0.736
LOC100396874 Callithrix jacchus ENSCJAG00000000822 I 0.847
ENSCAFG00000013066 Canis familiaris ENSCAFG00000013066 I 0.918
ENSCPOG00000024533 Cavia porcellus ENSCPOG00000024533 I 0.918
SRSF12 Choloepus hoffmanni ENSCHOG00000013911 I 0.712
ENSCHOG00000007773 Choloepus hoffmanni ENSCHOG00000007773 I 0.958
ENSCHOG00000004836 Choloepus hoffmanni ENSCHOG00000004836 I 0.958
ENSCSAVG00000005130 Ciona savignyi ENSCSAVG00000005130 I 0.708
CR293507.1 Danio rerio ENSDARG00000022415 I 0.781
Srsf10 Dipodomys ordii ENSDORG00000009136 I 0.930
SRSF12 Echinops telfairi ENSETEG00000001386 I 0.708
ENSECAG00000023709 Equus caballus ENSECAG00000023709 I 0.781
SRSF12 Erinaceus europaeus ENSEEUG00000011026 I 0.822
ENSEEUG00000014286 Erinaceus europaeus ENSEEUG00000014286 I 0.890
ENSFCAG00000002888 Felis catus ENSFCAG00000002888 I 0.789
Q5ZMR4_CHICK Gallus gallus ENSGALG00000004133 I 0.915
ENSGACG00000002231 Gasterosteus aculeatus ENSGACG00000002231 I 0.795
ENSGGOG00000000392 Gorilla gorilla ENSGGOG00000000392 I 0.918
BX511012.1 Homo sapiens ENSG00000215699 I 0.958
Fusip1 Homo sapiens ENSG00000188529 D 0.958
SRSF12 Homo sapiens ENSG00000154548 I 0.847
ENSLAFG00000026905 Loxodonta africana ENSLAFG00000026905 I 0.918
SRSF12 Macaca mulatta ENSMMUG00000014941 I 0.808
ENSMMUG00000013784 Macaca mulatta ENSMMUG00000013784 I 0.958
ENSMGAG00000005772 Meleagris gallopavo ENSMGAG00000005772 I 0.831
ENSMICG00000017029 Microcebus murinus ENSMICG00000017029 I 0.958
ENSMICG00000000520 Microcebus murinus ENSMICG00000000520 I 0.753
XM_001362581.1 Monodelphis domestica ENSMODG00000013020 I 0.890
SRSF12 Monodelphis domestica ENSMODG00000018282 I 0.795
Srsf10 Mus musculus ENSMUSG00000028676 I 0.958
Srsf12 Mus musculus ENSMUSG00000054679 I 0.847
ENSOPRG00000018613 Ochotona princeps ENSOPRG00000018613 I 0.958
ENSOCUG00000028110 Oryctolagus cuniculus ENSOCUG00000028110 I 0.806
ENSOCUG00000024013 Oryctolagus cuniculus ENSOCUG00000024013 I 0.958
ENSOCUG00000021782 Oryctolagus cuniculus ENSOCUG00000021782 I 0.930
SRSF12 Oryctolagus cuniculus ENSOCUG00000000945 I 0.795
SRSF10 Oryzias latipes ENSORLG00000007691 I 0.819
ENSOGAG00000015374 Otolemur garnettii ENSOGAG00000015374 I 0.890
XR_020461.1 Pan troglodytes ENSPTRG00000024234 I 0.958
SRSF12 Pan troglodytes ENSPTRG00000018415 I 0.808
ENSPPYG00000001726 Pongo pygmaeus ENSPPYG00000001726 I 0.958
SRSF12 Procavia capensis ENSPCAG00000010020 I 0.822
ENSPCAG00000004059 Procavia capensis ENSPCAG00000004059 I 0.958
ENSPVAG00000013611 Pteropus vampyrus ENSPVAG00000013611 I 0.958
D3ZB38_RAT Rattus norvegicus ENSRNOG00000007992 I 0.958
Srrp Rattus norvegicus ENSRNOG00000024247 I 0.847
ENSSTOG00000000956 Spermophilus tridecemlineatus ENSSTOG00000000956 I 0.753
SRSF12 Sus scrofa ENSSSCG00000004313 I 0.822
FUSIP1 Taeniopygia guttata ENSTGUG00000001178 I 0.863
SRSF10 Takifugu rubripes ENSTRUG00000006317 I 0.808
ENSTSYG00000009439 Tarsius syrichta ENSTSYG00000009439 I 0.817
SLC9A1 Tetraodon nigroviridis ENSTNIG00000005725 I 0.817
SRSF12 Tursiops truncatus ENSTTRG00000003682 I 0.822
ENSTTRG00000016150 Tursiops truncatus ENSTTRG00000016150 I 0.958
SRSF12 Vicugna pacos ENSVPAG00000004175 I 0.822
AAH46695 Xenopus laevis AAH46695 I 0.861
AAH84231 Xenopus laevis AAH84231 I 0.833
srsf12 Xenopus tropicalis ENSXETG00000005385 I 0.813