NCL (Choloepus hoffmanni)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSCHOG00000012860 T35337_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
NCL
M245_0.6 		Homo sapiens CCGAAAKCCCGAAGYAGG SELEX
Cook et al.(2011)
1004_8676391 		0.752
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSCHOP00000011388 RRM 102 152
ENSCHOP00000011388 RRM 170 235
ENSCHOP00000011388 RRM 263 325
ENSCHOP00000011388 RRM 347 412

Links

Other RRM family RBPs
Other Choloepus hoffmanni RBPs

22 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
Ame_R005385 Ailuropoda melanoleuca Ame_R005385 I 0.763
NCL Bos taurus ENSBTAG00000016174 I 0.770
ENSBTAG00000026909 Bos taurus ENSBTAG00000026909 I 0.756
LOC100395223 Callithrix jacchus ENSCJAG00000013538 I 0.748
NCL Canis familiaris ENSCAFG00000011037 I 0.767
ENSETEG00000014756 Echinops telfairi ENSETEG00000014756 I 0.722
ENSETEG00000018937 Echinops telfairi ENSETEG00000018937 I 0.715
Q6X9Z0_HORSE Equus caballus ENSECAG00000021868 I 0.763
NCL Erinaceus europaeus ENSEEUG00000005913 I 0.704
NCL Gorilla gorilla ENSGGOG00000004300 I 0.752
NCL Homo sapiens ENSG00000115053 D 0.752
NCL Macaca mulatta ENSMMUG00000018094 I 0.752
NCL Microcebus murinus ENSMICG00000002538 I 0.730
NCL Oryctolagus cuniculus ENSOCUG00000004312 I 0.748
NCL Pan troglodytes ENSPTRG00000013025 I 0.752
ENSPPYG00000013265 Pongo pygmaeus ENSPPYG00000013265 I 0.754
NCL Pteropus vampyrus ENSPVAG00000000297 I 0.759
ENSRNOG00000008664 Rattus norvegicus ENSRNOG00000008664 I 0.709
Ncl Rattus norvegicus ENSRNOG00000018273 I 0.704
ENSSSCG00000016275 Sus scrofa ENSSSCG00000016275 I 0.750
NCL Tarsius syrichta ENSTSYG00000004355 I 0.744
NCL Tursiops truncatus ENSTTRG00000009094 I 0.763