ENSRNOG00000008664 (Rattus norvegicus)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSRNOG00000008664 T41062_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
NCL
M245_0.6 		Homo sapiens CCGAAAKCCCGAAGYAGG SELEX
Cook et al.(2011)
1004_8676391 		0.885
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSRNOP00000011480 RRM 169 235
ENSRNOP00000011480 RRM 253 318
ENSRNOP00000011480 RRM 345 411
ENSRNOP00000011480 RRM 431 498

Links

Other RRM family RBPs
Other Rattus norvegicus RBPs

32 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
Ncl Rattus norvegicus ENSRNOG00000018273 I 0.985
Ncl Mus musculus ENSMUSG00000026234 I 0.956
NCL Oryctolagus cuniculus ENSOCUG00000004312 I 0.893
NCL Canis familiaris ENSCAFG00000011037 I 0.893
NCL Bos taurus ENSBTAG00000016174 I 0.889
Ame_R005385 Ailuropoda melanoleuca Ame_R005385 I 0.889
NCL Tursiops truncatus ENSTTRG00000009094 I 0.889
NCL Homo sapiens ENSG00000115053 D 0.885
NCL Pteropus vampyrus ENSPVAG00000000297 I 0.885
NCL Gorilla gorilla ENSGGOG00000004300 I 0.885
NCL Pan troglodytes ENSPTRG00000013025 I 0.885
NCL Macaca mulatta ENSMMUG00000018094 I 0.885
Q6X9Z0_HORSE Equus caballus ENSECAG00000021868 I 0.885
NCL Tarsius syrichta ENSTSYG00000004355 I 0.881
LOC100395223 Callithrix jacchus ENSCJAG00000013538 I 0.881
ENSBTAG00000026909 Bos taurus ENSBTAG00000026909 I 0.874
Ncl Dipodomys ordii ENSDORG00000012513 I 0.867
NCL Microcebus murinus ENSMICG00000002538 I 0.859
ENSETEG00000014756 Echinops telfairi ENSETEG00000014756 I 0.852
ENSETEG00000018937 Echinops telfairi ENSETEG00000018937 I 0.848
NCL Erinaceus europaeus ENSEEUG00000005913 I 0.841
ENSPPYG00000013265 Pongo pygmaeus ENSPPYG00000013265 I 0.799
NCL Cavia porcellus ENSCPOG00000001034 I 0.796
ENSSSCG00000016275 Sus scrofa ENSSSCG00000016275 I 0.791
NCL Vicugna pacos ENSVPAG00000001796 I 0.774
NCL Monodelphis domestica ENSMODG00000002470 I 0.764
NCL Ornithorhynchus anatinus ENSOANG00000008732 I 0.760
NCL Macropus eugenii ENSMEUG00000012335 I 0.760
ENSTBEG00000001546 Tupaia belangeri ENSTBEG00000001546 I 0.737
NCL Loxodonta africana ENSLAFG00000013061 I 0.737
ENSTBEG00000002469 Tupaia belangeri ENSTBEG00000002469 I 0.730
NCL Choloepus hoffmanni ENSCHOG00000012860 I 0.709