Ncl (Rattus norvegicus)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSRNOG00000018273 T41120_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
NCL
M245_0.6 		Homo sapiens CCGAAAKCCCGAAGYAGG SELEX
Cook et al.(2011)
1004_8676391 		0.889
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSRNOP00000024712 RRM 314 382
ENSRNOP00000024712 RRM 400 465
ENSRNOP00000024712 RRM 492 558
ENSRNOP00000024712 RRM 578 645
ENSRNOP00000063460 RRM 169 237
ENSRNOP00000063460 RRM 255 320
ENSRNOP00000063460 RRM 347 413
ENSRNOP00000063460 RRM 433 500

Links

Other RRM family RBPs
Other Rattus norvegicus RBPs

33 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
ENSRNOG00000008664 Rattus norvegicus ENSRNOG00000008664 I 0.985
Ncl Mus musculus ENSMUSG00000026234 I 0.970
NCL Bos taurus ENSBTAG00000016174 I 0.893
NCL Oryctolagus cuniculus ENSOCUG00000004312 I 0.893
NCL Canis familiaris ENSCAFG00000011037 I 0.893
NCL Tursiops truncatus ENSTTRG00000009094 I 0.889
NCL Pteropus vampyrus ENSPVAG00000000297 I 0.889
NCL Homo sapiens ENSG00000115053 D 0.889
NCL Gorilla gorilla ENSGGOG00000004300 I 0.889
NCL Pan troglodytes ENSPTRG00000013025 I 0.889
NCL Macaca mulatta ENSMMUG00000018094 I 0.889
Ame_R005385 Ailuropoda melanoleuca Ame_R005385 I 0.889
Q6X9Z0_HORSE Equus caballus ENSECAG00000021868 I 0.885
NCL Tarsius syrichta ENSTSYG00000004355 I 0.885
LOC100395223 Callithrix jacchus ENSCJAG00000013538 I 0.885
ENSBTAG00000026909 Bos taurus ENSBTAG00000026909 I 0.878
Ncl Dipodomys ordii ENSDORG00000012513 I 0.878
NCL Microcebus murinus ENSMICG00000002538 I 0.863
ENSETEG00000014756 Echinops telfairi ENSETEG00000014756 I 0.856
ENSETEG00000018937 Echinops telfairi ENSETEG00000018937 I 0.852
NCL Erinaceus europaeus ENSEEUG00000005913 I 0.844
NCL Cavia porcellus ENSCPOG00000001034 I 0.800
ENSPPYG00000013265 Pongo pygmaeus ENSPPYG00000013265 I 0.796
ENSSSCG00000016275 Sus scrofa ENSSSCG00000016275 I 0.789
NCL Vicugna pacos ENSVPAG00000001796 I 0.774
NCL Monodelphis domestica ENSMODG00000002470 I 0.768
NCL Macropus eugenii ENSMEUG00000012335 I 0.764
NCL Ornithorhynchus anatinus ENSOANG00000008732 I 0.760
NCL Loxodonta africana ENSLAFG00000013061 I 0.741
ENSTBEG00000001546 Tupaia belangeri ENSTBEG00000001546 I 0.741
ENSTBEG00000002469 Tupaia belangeri ENSTBEG00000002469 I 0.733
NCL Choloepus hoffmanni ENSCHOG00000012860 I 0.704