rbm42 (Danio rerio)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSDARG00000039910 T36137_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
ENSXETG00000017599
M237_0.6 		Xenopus tropicalis WACUAC RNAcompete
Ray et al.(2013)
RNCMPT00282 		0.958
RBM42
M142_0.6 		Homo sapiens AACUAMG RNAcompete
Ray et al.(2013)
RNCMPT00151 		0.944
CG2931
M138_0.6 		Drosophila melanogaster DACUAAG RNAcompete
Ray et al.(2013)
RNCMPT00147 		0.718
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSDARP00000058379 RRM 305 375

Links

Other RRM family RBPs
Other Danio rerio RBPs

110 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
DGIL_AUG5s15230g22t1 Acyrtosiphon pisum DGIL_AUG5s15230g22t1 I 0.732
AAEL010642 Aedes aegypti AAEL010642 I 0.746
Ame_R009099 Ailuropoda melanoleuca Ame_R009099 I 0.944
Aqu1.218430 Amphimedon queenslandica Aqu1.218430 I 0.718
RBM42 Anolis carolinensis ENSACAG00000005495 I 0.972
AGAP010200 Anopheles gambiae AGAP010200 I 0.761
amel4_ncbi_hmm2520 Apis mellifera amel4_ncbi_hmm2520 I 0.775
XM_002884402.1 Arabidopsis lyrata fgenesh2_kg.3__407__AT3G04500.1 I 0.718
AT3G04500 Arabidopsis thaliana AT3G04500-TAIR-G I 0.718
BGIBMGA005213 Bombyx mori BGIBMGA005213 I 0.704
RBM42_BOVIN Bos taurus ENSBTAG00000013440 I 0.944
BRADI3G12840 Brachypodium distachyon BRADI3G12840 I 0.761
BRADI3G49130 Brachypodium distachyon BRADI3G49130 I 0.704
estExt_fgenesh2_pg.C_7640002 Branchiostoma floridae estExt_fgenesh2_pg.C_7640002 I 0.873
estExt_fgenesh2_pg.C_360096 Branchiostoma floridae estExt_fgenesh2_pg.C_360096 I 0.873
Bm1_40380 Brugia malayi Bm1_40380 I 0.718
CBN12017 Caenorhabditis brenneri CBN12017 I 0.746
CBG21313 Caenorhabditis briggsae CBG21313 I 0.746
tag-262 Caenorhabditis elegans Y54H5A.3 I 0.746
CJA09414 Caenorhabditis japonica CJA09414 I 0.732
CRE29329 Caenorhabditis remanei CRE29329 I 0.746
RBM42 Callithrix jacchus ENSCJAG00000010220 I 0.944
RBM42 Canis familiaris ENSCAFG00000006925 I 0.944
PK16312.1 Cannabis sativa PK16312.1 I 0.761
estExt_Genewise1Plus.C_1180017 Capitella teleta estExt_Genewise1Plus.C_1180017 I 0.789
RBM42 Cavia porcellus ENSCPOG00000012365 I 0.944
ENSCING00000006773 Ciona intestinalis ENSCING00000006773 I 0.761
Cucsa.178480 Cucumis sativus Cucsa.178480 I 0.746
e_gw1.30.201.1 Daphnia pulex e_gw1.30.201.1 I 0.746
GF11626 Drosophila ananassae FBgn0088666 I 0.718
GG10948 Drosophila erecta FBgn0103251 I 0.704
GH22277 Drosophila grimshawi FBgn0129737 I 0.704
CG2931 Drosophila melanogaster FBgn0037342 D 0.718
GI23084 Drosophila mojavensis FBgn0145811 I 0.704
GL22151 Drosophila persimilis FBgn0159743 I 0.704
GA15528-RA Drosophila pseudoobscura FBgn0075545 I 0.704
GM10617 Drosophila sechellia FBgn0165563 I 0.718
GD19605 Drosophila simulans FBgn0191097 I 0.704
GJ22705 Drosophila virilis FBgn0209809 I 0.704
GK12952 Drosophila willistoni FBgn0214961 I 0.704
GE24162 Drosophila yakuba FBgn0241294 I 0.718
RBM42 Echinops telfairi ENSETEG00000007878 I 0.775
LOC100051102 Equus caballus ENSECAG00000018215 I 0.944
RBM42 Erinaceus europaeus ENSEEUG00000004841 I 0.944
RBM42 Felis catus ENSFCAG00000006376 I 0.817
RBM42 Gasterosteus aculeatus ENSGACG00000004170 I 0.986
Glyma11g01300.1 Glycine max Glyma11g01300.1 I 0.732
Glyma10g30900.1 Glycine max Glyma10g30900.1 I 0.746
Glyma20g36570.1 Glycine max Glyma20g36570.1 I 0.746
RBM42 Gorilla gorilla ENSGGOG00000009972 I 0.944
76581 Helobdella robusta 76581 I 0.704
RBM42 Homo sapiens ENSG00000126254 D 0.944
XP_002167334.1 Hydra magnipapillata XP_002167334.1 I 0.789
LOAG_04208 Loa loa LOAG_04208 I 0.718
e_gw1.16.225.1 Lottia gigantea e_gw1.16.225.1 I 0.775
LjSGA_021949.1 Lotus japonicus LjSGA_021949.1 I 0.732
RBM42 Loxodonta africana ENSLAFG00000014993 N 0.845
RBM42 Macaca mulatta ENSMMUG00000018954 I 0.944
ENSMEUG00000016300 Macropus eugenii ENSMEUG00000016300 I 0.944
ENSMEUG00000003054 Macropus eugenii ENSMEUG00000003054 I 0.845
MDP0000283678 Malus x domestica MDP0000283678 I 0.732
MDP0000320908 Malus x domestica MDP0000320908 I 0.732
cassava22669.valid.m1 Manihot esculenta cassava22669.valid.m1 I 0.746
Medtr1g093610 Medicago truncatula Medtr1g093610 I 0.718
RBM42 Microcebus murinus ENSMICG00000009880 I 0.944
mgf018525m Mimulus guttatus mgf018525m I 0.718
mgf021739m Mimulus guttatus mgf021739m I 0.746
RBM42 Monodelphis domestica ENSMODG00000013957 I 0.944
Rbm42 Mus musculus ENSMUSG00000036733 I 0.944
RBM42 Myotis lucifugus ENSMLUG00000011334 I 0.944
e_gw.92.129.1 Nematostella vectensis e_gw.92.129.1 I 0.732
RBM42 Ochotona princeps ENSOPRG00000001229 I 0.944
RBM42 Oryctolagus cuniculus ENSOCUG00000003337 I 0.944
BGIOSIBCE028936 Oryza indica BGIOSIBCE028936 I 0.746
LOC_Os08g45240 Oryza sativa LOC_Os08g45240 I 0.746
RBM42 Oryzias latipes ENSORLG00000003387 I 0.986
RBM42 Otolemur garnettii ENSOGAG00000004144 I 0.944
RBM42 Pan troglodytes ENSPTRG00000010852 I 0.944
PHUM106890 Pediculus humanus PHUM106890 I 0.789
PDK_20s1323974g003 Phoenix dactylifera PDK_20s1323974g003 I 0.718
PDK_20s1301681g005 Phoenix dactylifera PDK_20s1301681g005 I 0.718
ENSPPYG00000009871 Pongo pygmaeus ENSPPYG00000009871 I 0.944
B9IPA5_POPTR Populus trichocarpa POPTR_0019s03570 I 0.746
B9I5N8_POPTR Populus trichocarpa POPTR_0013s04390 I 0.732
Ppa-tag-262 Pristionchus pacificus PPA14507 I 0.718
RBM42 Procavia capensis ENSPCAG00000013053 I 0.944
ppa010477m Prunus persica ppa010477m I 0.732
RBM42 Pteropus vampyrus ENSPVAG00000012815 I 0.944
Rbm42 Rattus norvegicus ENSRNOG00000024278 I 0.944
29680.m001693 Ricinus communis 29680.m001693 I 0.746
PTSG_04228 Salpingoeca rosetta PTSG_04228 I 0.718
Sjc_0014630 Schistosoma japonicum Sjc_0014630 N 0.704
RBM42 Sorex araneus ENSSARG00000010724 I 0.944
Sb02g038420 Sorghum bicolor Sb02g038420 I 0.746
SB04G026430 Sorghum bicolor Sb04g026430 I 0.704
RBM42 Spermophilus tridecemlineatus ENSSTOG00000013050 I 0.944
SPPG_03010 Spizellomyces punctatus SPPG_03010 I 0.775
RBM42 Sus scrofa ENSSSCG00000002905 I 0.944
RBM42 Takifugu rubripes ENSTRUG00000004663 I 0.986
RBM42 Tarsius syrichta ENSTSYG00000014688 I 0.944
RBM42 Tetraodon nigroviridis ENSTNIG00000011669 I 0.986
GSVIVG00023509001 Vitis vinifera GSVIVG00023509001 I 0.746
GSVIVG00016104001 Vitis vinifera GSVIVG00016104001 I 0.718
WUBG_05387 Wuchereria bancrofti WUBG_05387 I 0.718
A2VDB3 Xenopus laevis A2VDB3 I 0.944
AAI29577 Xenopus laevis AAI29577 I 0.901
AAI29698 Xenopus laevis AAI29698 I 0.944
ENSXETG00000017599 Xenopus tropicalis ENSXETG00000017599 D 0.958
GRMZM2G125529 Zea mays GRMZM2G125529 I 0.718
GRMZM2G068255 Zea mays GRMZM2G068255 I 0.746