ENSETEG00000018059 (Echinops telfairi)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSETEG00000018059 T37012_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
HNRNPA1
M312_0.6 		Homo sapiens Sequence logo not available UAGGGW RIP-chip
Cook et al.(2011)
560_17925491 		0.789
HNRNPA1
M271_0.6 		Homo sapiens UAGGGW SELEX
Cook et al.(2011)
23_7510636 		0.789
HNRNPA1
M022_0.6 		Homo sapiens DUAGGGW RNAcompete
Ray et al.(2013)
RNCMPT00022 		0.789
HNRNPA1L2
M023_0.6 		Homo sapiens DUAGGGW RNAcompete
Ray et al.(2013)
RNCMPT00023 		0.782
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSETEP00000014675 RRM 17 85
ENSETEP00000014675 RRM 106 171

Links

Other RRM family RBPs
Other Echinops telfairi RBPs

123 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
Ame_R018030 Ailuropoda melanoleuca Ame_R018030 I 0.000
Ame_R015370 Ailuropoda melanoleuca Ame_R015370 I 0.000
Ame_R011792 Ailuropoda melanoleuca Ame_R011792 I 0.745
ENSACAG00000007169 Anolis carolinensis ENSACAG00000007169 I 0.745
HNRNPA3 Anolis carolinensis ENSACAG00000012234 I 0.000
LOC785445 Bos taurus ENSBTAG00000025621 I 0.710
LOC781499 Bos taurus ENSBTAG00000021580 I 0.000
ROA1_BOVIN Bos taurus ENSBTAG00000001553 I 0.745
ENSCJAG00000007250 Callithrix jacchus ENSCJAG00000007250 I 0.000
ENSCJAG00000008584 Callithrix jacchus ENSCJAG00000008584 I 0.000
LOC100413454 Callithrix jacchus ENSCJAG00000009030 I 0.738
ENSCJAG00000009723 Callithrix jacchus ENSCJAG00000009723 I 0.715
ENSCJAG00000010169 Callithrix jacchus ENSCJAG00000010169 I 0.000
ENSCJAG00000006928 Callithrix jacchus ENSCJAG00000006928 I 0.000
ENSCJAG00000004902 Callithrix jacchus ENSCJAG00000004902 I 0.710
LOC100397230 Callithrix jacchus ENSCJAG00000004031 I 0.750
LOC100409067 Callithrix jacchus ENSCJAG00000003245 I 0.738
ENSCJAG00000001737 Callithrix jacchus ENSCJAG00000001737 I 0.000
ENSCJAG00000001353 Callithrix jacchus ENSCJAG00000001353 I 0.722
ENSCJAG00000000095 Callithrix jacchus ENSCJAG00000000095 I 0.724
LOC100397230 Callithrix jacchus ENSCJAG00000014791 I 0.715
ENSCJAG00000016375 Callithrix jacchus ENSCJAG00000016375 I 0.708
ENSCJAG00000035202 Callithrix jacchus ENSCJAG00000035202 I 0.708
ENSCJAG00000033856 Callithrix jacchus ENSCJAG00000033856 I 0.745
ENSCJAG00000033784 Callithrix jacchus ENSCJAG00000033784 I 0.000
ENSCJAG00000032417 Callithrix jacchus ENSCJAG00000032417 I 0.000
LOC100410389 Callithrix jacchus ENSCJAG00000023392 I 0.717
ENSCJAG00000031552 Callithrix jacchus ENSCJAG00000031552 I 0.717
LOC100411573 Callithrix jacchus ENSCJAG00000023383 I 0.000
ENSCJAG00000020672 Callithrix jacchus ENSCJAG00000020672 I 0.000
ENSCJAG00000019479 Callithrix jacchus ENSCJAG00000019479 I 0.745
LOC100397230 Callithrix jacchus ENSCJAG00000018864 I 0.745
ENSCJAG00000017130 Callithrix jacchus ENSCJAG00000017130 I 0.000
ENSCAFG00000018186 Canis familiaris ENSCAFG00000018186 I 0.701
ENSCAFG00000025274 Canis familiaris ENSCAFG00000025274 I 0.000
ENSCAFG00000024951 Canis familiaris ENSCAFG00000024951 I 0.731
ENSCAFG00000007198 Canis familiaris ENSCAFG00000007198 I 0.000
ENSCAFG00000006784 Canis familiaris ENSCAFG00000006784 I 0.717
XP_541811.1 Canis familiaris ENSCAFG00000006586 I 0.000
XM_534786.2 Canis familiaris ENSCAFG00000006580 I 0.745
ENSCAFG00000005308 Canis familiaris ENSCAFG00000005308 I 0.703
ENSCAFG00000005207 Canis familiaris ENSCAFG00000005207 I 0.000
ENSCAFG00000005164 Canis familiaris ENSCAFG00000005164 I 0.000
XM_854536.1 Canis familiaris ENSCAFG00000005046 I 0.724
ENSCAFG00000004202 Canis familiaris ENSCAFG00000004202 I 0.708
ENSCAFG00000003493 Canis familiaris ENSCAFG00000003493 I 0.701
ENSCAFG00000001973 Canis familiaris ENSCAFG00000001973 I 0.722
XM_543834.2 Canis familiaris ENSCAFG00000002157 I 0.000
ENSCAFG00000002059 Canis familiaris ENSCAFG00000002059 I 0.000
ENSCAFG00000007879 Canis familiaris ENSCAFG00000007879 I 0.703
ENSCAFG00000008301 Canis familiaris ENSCAFG00000008301 I 0.000
ENSCAFG00000023240 Canis familiaris ENSCAFG00000023240 I 0.000
XM_852631.1 Canis familiaris ENSCAFG00000023680 I 0.724
ENSCAFG00000019118 Canis familiaris ENSCAFG00000019118 I 0.722
ENSCAFG00000019104 Canis familiaris ENSCAFG00000019104 I 0.708
XM_855847.1 Canis familiaris ENSCAFG00000006327 I 0.000
ENSCAFG00000017316 Canis familiaris ENSCAFG00000017316 I 0.739
XP_848548.1 Canis familiaris ENSCAFG00000016313 I 0.000
ENSCAFG00000015319 Canis familiaris ENSCAFG00000015319 I 0.729
ENSCAFG00000014094 Canis familiaris ENSCAFG00000014094 I 0.000
ENSCAFG00000013497 Canis familiaris ENSCAFG00000013497 I 0.000
ENSCAFG00000011035 Canis familiaris ENSCAFG00000011035 I 0.722
ENSCAFG00000010153 Canis familiaris ENSCAFG00000010153 I 0.731
ENSCAFG00000020238 Canis familiaris ENSCAFG00000020238 I 0.715
ENSCPOG00000004251 Cavia porcellus ENSCPOG00000004251 I 0.000
HNRNPA3 Cavia porcellus ENSCPOG00000011301 I 0.000
ENSCPOG00000021077 Cavia porcellus ENSCPOG00000021077 I 0.731
zgc:66127 Danio rerio ENSDARG00000011020 I 0.000
hnrnpa1 Danio rerio ENSDARG00000036675 I 0.000
hnrnpa3 Danio rerio ENSDARG00000059351 I 0.000
ENSDNOG00000009228 Dasypus novemcinctus ENSDNOG00000009228 I 0.745
HNRNPA3 Dasypus novemcinctus ENSDNOG00000019022 I 0.000
ENSDORG00000011155 Dipodomys ordii ENSDORG00000011155 I 0.000
Hnrnpa1 Dipodomys ordii ENSDORG00000010628 I 0.704
ENSETEG00000015332 Echinops telfairi ENSETEG00000015332 I 0.701
LOC100066794 Equus caballus ENSECAG00000023237 I 0.000
LOC100054206 Equus caballus ENSECAG00000006699 I 0.729
Q6DTK6_HORSE Equus caballus ENSECAG00000008676 I 0.745
ENSEEUG00000000925 Erinaceus europaeus ENSEEUG00000000925 I 0.000
ENSEEUG00000000494 Erinaceus europaeus ENSEEUG00000000494 I 0.717
ENSEEUG00000011837 Erinaceus europaeus ENSEEUG00000011837 I 0.000
ENSEEUG00000006130 Erinaceus europaeus ENSEEUG00000006130 I 0.731
ENSEEUG00000009941 Erinaceus europaeus ENSEEUG00000009941 I 0.000
ENSFCAG00000010150 Felis catus ENSFCAG00000010150 I 0.745
HNRNPA3 Felis catus ENSFCAG00000012146 I 0.000
HNRPA3 Gallus gallus ENSGALG00000009250 I 0.000
ENSGACG00000009435 Gasterosteus aculeatus ENSGACG00000009435 I 0.000
HNRNPA3 Gasterosteus aculeatus ENSGACG00000004477 I 0.000
ENSGGOG00000025381 Gorilla gorilla ENSGGOG00000025381 I 0.745
ENSGGOG00000027879 Gorilla gorilla ENSGGOG00000027879 I 0.000
ENSGGOG00000025827 Gorilla gorilla ENSGGOG00000025827 I 0.000
ENSGGOG00000025446 Gorilla gorilla ENSGGOG00000025446 I 0.000
ENSGGOG00000025265 Gorilla gorilla ENSGGOG00000025265 I 0.000
ENSGGOG00000022020 Gorilla gorilla ENSGGOG00000022020 I 0.000
HNRNPA3 Gorilla gorilla ENSGGOG00000006130 I 0.000
HNRNPA1 Gorilla gorilla ENSGGOG00000003040 I 0.745
HNRNPA1 Homo sapiens ENSG00000135486 D 0.745
HNRNPA1L2 Homo sapiens ENSG00000139675 D 0.738
HNRNPA3 Homo sapiens ENSG00000170144 I 0.000
ENSG00000215492 Homo sapiens ENSG00000215492 I 0.745
ENSLAFG00000029587 Loxodonta africana ENSLAFG00000029587 I 0.752
ENSLAFG00000030769 Loxodonta africana ENSLAFG00000030769 I 0.731
HNRNPA3 Loxodonta africana ENSLAFG00000027712 I 0.000
ENSLAFG00000026657 Loxodonta africana ENSLAFG00000026657 I 0.731
LOC710473 Macaca mulatta ENSMMUG00000012989 I 0.745
XR_010472.1 Macaca mulatta ENSMMUG00000012991 I 0.708
ENSMMUG00000018397 Macaca mulatta ENSMMUG00000018397 I 0.000
LOC710473 Macaca mulatta ENSMMUG00000029402 I 0.738
ROA1_MACMU Macaca mulatta ENSMMUG00000031613 I 0.731
XM_001106745.1 Macaca mulatta ENSMMUG00000031809 I 0.708
ENSMMUG00000031948 Macaca mulatta ENSMMUG00000031948 I 0.000
LOC710473 Macaca mulatta ENSMMUG00000007928 I 0.731
LOC710473 Macaca mulatta ENSMMUG00000007887 I 0.745
ENSMMUG00000007695 Macaca mulatta ENSMMUG00000007695 I 0.000
ENSMMUG00000001858 Macaca mulatta ENSMMUG00000001858 I 0.000
HNRNPA3 Macropus eugenii ENSMEUG00000013622 I 0.000
ENSMGAG00000007630 Meleagris gallopavo ENSMGAG00000007630 I 0.719
HNRNPA3 Meleagris gallopavo ENSMGAG00000009565 I 0.000
HNRNPA3 Microcebus murinus ENSMICG00000005513 I 0.000
ENSMICG00000009289 Microcebus murinus ENSMICG00000009289 I 0.708
ENSMODG00000006291 Monodelphis domestica ENSMODG00000006291 I 0.705
HNRNPA3 Monodelphis domestica ENSMODG00000019803 I 0.000
ENSMODG00000023422 Monodelphis domestica ENSMODG00000023422 I 0.715
ENSMODG00000024570 Monodelphis domestica ENSMODG00000024570 I 0.000
Gm8991 Mus musculus ENSMUSG00000059179 I 0.000
Hnrnpa3 Mus musculus ENSMUSG00000059005 I 0.000
Hnrnpa1 Mus musculus ENSMUSG00000046434 I 0.745
ENSMUSG00000021927 Mus musculus ENSMUSG00000021927 I 0.717
ENSMLUG00000000648 Myotis lucifugus ENSMLUG00000000648 I 0.745
ENSMLUG00000000788 Myotis lucifugus ENSMLUG00000000788 I 0.715
ENSMLUG00000003232 Myotis lucifugus ENSMLUG00000003232 I 0.731
HNRNPA3 Myotis lucifugus ENSMLUG00000003906 I 0.000
ENSOPRG00000006107 Ochotona princeps ENSOPRG00000006107 I 0.738
ENSOCUG00000023444 Oryctolagus cuniculus ENSOCUG00000023444 I 0.738
ENSOCUG00000023674 Oryctolagus cuniculus ENSOCUG00000023674 I 0.745
ENSOCUG00000028124 Oryctolagus cuniculus ENSOCUG00000028124 I 0.745
ENSOCUG00000022627 Oryctolagus cuniculus ENSOCUG00000022627 I 0.000
ENSOCUG00000023322 Oryctolagus cuniculus ENSOCUG00000023322 I 0.738
ENSOCUG00000022668 Oryctolagus cuniculus ENSOCUG00000022668 I 0.731
ENSOCUG00000022568 Oryctolagus cuniculus ENSOCUG00000022568 I 0.738
ENSOCUG00000021007 Oryctolagus cuniculus ENSOCUG00000021007 I 0.738
ENSOCUG00000021006 Oryctolagus cuniculus ENSOCUG00000021006 I 0.724
ENSOCUG00000010985 Oryctolagus cuniculus ENSOCUG00000010985 I 0.731
ENSOCUG00000013350 Oryctolagus cuniculus ENSOCUG00000013350 I 0.745
ENSOCUG00000006431 Oryctolagus cuniculus ENSOCUG00000006431 I 0.000
HNRNPA3 Oryctolagus cuniculus ENSOCUG00000002743 I 0.000
HNRNPA3 Oryzias latipes ENSORLG00000017561 I 0.000
ENSORLG00000008001 Oryzias latipes ENSORLG00000008001 I 0.000
ENSOGAG00000009945 Otolemur garnettii ENSOGAG00000009945 I 0.724
HNRNPA1L2 Pan troglodytes ENSPTRG00000032520 I 0.745
ROA1_PANTR Pan troglodytes ENSPTRG00000031363 I 0.745
ROA1_PANTR Pan troglodytes ENSPTRG00000028756 I 0.745
ENSPTRG00000018253 Pan troglodytes ENSPTRG00000018253 I 0.000
HNRNPA3 Pan troglodytes ENSPTRG00000012676 I 0.000
ROA1_PANTR Pan troglodytes ENSPTRG00000005035 I 0.745
ENSPPYG00000001326 Pongo pygmaeus ENSPPYG00000001326 I 0.000
ENSPPYG00000012967 Pongo pygmaeus ENSPPYG00000012967 I 0.000
ENSPPYG00000016683 Pongo pygmaeus ENSPPYG00000016683 I 0.000
ENSPPYG00000017853 Pongo pygmaeus ENSPPYG00000017853 I 0.724
ENSPCAG00000001867 Procavia capensis ENSPCAG00000001867 I 0.000
ENSPVAG00000000322 Pteropus vampyrus ENSPVAG00000000322 I 0.745
HNRNPA3 Pteropus vampyrus ENSPVAG00000010380 I 0.000
ENSRNOG00000033211 Rattus norvegicus ENSRNOG00000033211 I 0.000
ENSRNOG00000033182 Rattus norvegicus ENSRNOG00000033182 I 0.710
D3ZTB7_RAT Rattus norvegicus ENSRNOG00000031608 I 0.000
ENSRNOG00000030901 Rattus norvegicus ENSRNOG00000030901 I 0.000
Hnrnpa1 Rattus norvegicus ENSRNOG00000036839 I 0.745
D3ZB90_RAT Rattus norvegicus ENSRNOG00000038392 N 0.000
D3ZXA3_RAT Rattus norvegicus ENSRNOG00000038905 I 0.000
ENSRNOG00000039436 Rattus norvegicus ENSRNOG00000039436 I 0.710
ENSRNOG00000042377 Rattus norvegicus ENSRNOG00000042377 I 0.000
D4A6Z0_RAT Rattus norvegicus ENSRNOG00000042924 N 0.000
ENSRNOG00000043173 Rattus norvegicus ENSRNOG00000043173 I 0.000
ENSRNOG00000030250 Rattus norvegicus ENSRNOG00000030250 I 0.000
D3ZB98_RAT Rattus norvegicus ENSRNOG00000029641 I 0.000
D4A491_RAT Rattus norvegicus ENSRNOG00000029531 I 0.710
D3ZNE1_RAT Rattus norvegicus ENSRNOG00000005671 I 0.000
ENSRNOG00000005951 Rattus norvegicus ENSRNOG00000005951 I 0.703
D4A8U2_RAT Rattus norvegicus ENSRNOG00000007252 I 0.000
ENSRNOG00000011100 Rattus norvegicus ENSRNOG00000011100 I 0.000
ENSRNOG00000013650 Rattus norvegicus ENSRNOG00000013650 I 0.000
ENSRNOG00000021280 Rattus norvegicus ENSRNOG00000021280 I 0.000
D4ACP9_RAT Rattus norvegicus ENSRNOG00000021929 I 0.000
D4A2D2_RAT Rattus norvegicus ENSRNOG00000021986 I 0.703
ENSRNOG00000024652 Rattus norvegicus ENSRNOG00000024652 I 0.000
D3ZK54_RAT Rattus norvegicus ENSRNOG00000025482 I 0.000
D4AD23_RAT Rattus norvegicus ENSRNOG00000025891 I 0.701
ROA3_RAT Rattus norvegicus ENSRNOG00000027001 I 0.000
D3ZX95_RAT Rattus norvegicus ENSRNOG00000027006 I 0.000
LOC100360986 Rattus norvegicus ENSRNOG00000001556 I 0.000
ENSSARG00000010620 Sorex araneus ENSSARG00000010620 I 0.000
ENSSARG00000008882 Sorex araneus ENSSARG00000008882 I 0.000
HNRNPA3 Sorex araneus ENSSARG00000007605 I 0.000
ENSSARG00000008946 Sorex araneus ENSSARG00000008946 I 0.704
ENSSTOG00000015259 Spermophilus tridecemlineatus ENSSTOG00000015259 I 0.000
ENSSSCG00000000288 Sus scrofa ENSSSCG00000000288 I 0.745
ENSSSCG00000015989 Sus scrofa ENSSSCG00000015989 I 0.000
HNRNPA3 Sus scrofa ENSSSCG00000015988 I 0.000
HNRNPA3 Taeniopygia guttata ENSTGUG00000008996 I 0.000
Q1KKU4_FUGRU Takifugu rubripes ENSTRUG00000002190 I 0.000
Q1KKS6_FUGRU Takifugu rubripes ENSTRUG00000017504 I 0.000
ENSTNIG00000015047 Tetraodon nigroviridis ENSTNIG00000015047 I 0.000
HNRNPA3 Tetraodon nigroviridis ENSTNIG00000016958 I 0.000
ENSTBEG00000012511 Tupaia belangeri ENSTBEG00000012511 I 0.000
ENSTBEG00000016272 Tupaia belangeri ENSTBEG00000016272 I 0.717
ENSTBEG00000008238 Tupaia belangeri ENSTBEG00000008238 I 0.745
ENSTTRG00000004505 Tursiops truncatus ENSTTRG00000004505 I 0.745
ENSTTRG00000015563 Tursiops truncatus ENSTTRG00000015563 I 0.000
HNRNPA3 Tursiops truncatus ENSTTRG00000014225 I 0.000
P17130 Xenopus laevis P17130 I 0.000
CBF67578 Xenopus laevis CBF67578 I 0.000
CBF67672 Xenopus laevis CBF67672 I 0.000
CBU92428 Xenopus laevis CBU92428 I 0.000
CBU92451 Xenopus laevis CBU92451 I 0.000
CBU92546 Xenopus laevis CBU92546 I 0.000
P51968 Xenopus laevis P51968 I 0.000
CBF67555 Xenopus laevis CBF67555 I 0.000
AAI69881 Xenopus laevis AAI69881 I 0.000
AAH72090 Xenopus laevis AAH72090 I 0.000
AAH45260 Xenopus laevis AAH45260 I 0.000
AAA49950 Xenopus laevis AAA49950 I 0.000
AAA49949 Xenopus laevis AAA49949 I 0.000
AAA49742 Xenopus laevis AAA49742 I 0.000
AAA49741 Xenopus laevis AAA49741 I 0.000
P51992 Xenopus laevis P51992 I 0.000
hnrnpa1 Xenopus tropicalis ENSXETG00000021277 I 0.000
hnrnpa3 Xenopus tropicalis ENSXETG00000001806 I 0.000