SYNCRIP (Homo sapiens)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSG00000135316 T37257_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
ENSXETG00000018075
M236_0.6 		Xenopus tropicalis MAAAWWD RNAcompete
Ray et al.(2013)
RNCMPT00281 		0.970
ENSXETG00000007102
M243_0.6 		Xenopus tropicalis MAAAAAG RNAcompete
Ray et al.(2013)
RNCMPT00289 		0.890
ENSGALG00000000814
M242_0.6 		Gallus gallus MMAAAWY RNAcompete
Ray et al.(2013)
RNCMPT00288 		0.851
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSP00000347380 RRM 164 232
ENSP00000347380 RRM 245 312
ENSP00000347380 RRM 340 402
ENSP00000358635 RRM 164 232
ENSP00000358635 RRM 245 312
ENSP00000358635 RRM 340 402
ENSP00000411660 RRM 164 232
ENSP00000411660 RRM 245 304
ENSP00000411660 RRM 305 367

Links

Other RRM family RBPs
Other Homo sapiens RBPs

85 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
Ame_R011496 Ailuropoda melanoleuca Ame_R011496 I 1.000
Ame_R001024 Ailuropoda melanoleuca Ame_R001024 I 0.847
SYNCRIP Anolis carolinensis ENSACAG00000015234 I 0.975
HNRNPR Anolis carolinensis ENSACAG00000017593 I 0.851
A7E355_BOVIN Bos taurus ENSBTAG00000006672 I 1.000
A3KMV6_BOVIN Bos taurus ENSBTAG00000016578 I 0.847
SYNCRIP Callithrix jacchus ENSCJAG00000015352 I 1.000
ENSCJAG00000013031 Callithrix jacchus ENSCJAG00000013031 I 0.751
HNRNPR Callithrix jacchus ENSCJAG00000005512 I 0.847
SYNCRIP Canis familiaris ENSCAFG00000003024 I 1.000
HNRNPR Canis familiaris ENSCAFG00000013308 I 0.839
ENSCPOG00000009653 Cavia porcellus ENSCPOG00000009653 I 0.847
SYNCRIP Cavia porcellus ENSCPOG00000012415 I 1.000
HNRNPR Choloepus hoffmanni ENSCHOG00000005090 I 0.834
syncrip Danio rerio ENSDARG00000040184 I 0.920
syncripl Danio rerio ENSDARG00000026723 I 0.896
SYNCRIP Dasypus novemcinctus ENSDNOG00000018345 I 0.790
Syncrip Dipodomys ordii ENSDORG00000005217 I 0.825
SYNCRIP Echinops telfairi ENSETEG00000020109 I 0.995
HNRNPR Equus caballus ENSECAG00000013733 I 0.847
LOC100070472 Equus caballus ENSECAG00000012464 I 0.845
HNRNPR Erinaceus europaeus ENSEEUG00000010120 I 0.809
SYNCRIP Erinaceus europaeus ENSEEUG00000004542 I 0.807
Q5ZLH7_CHICK Gallus gallus ENSGALG00000015830 I 0.995
ENSGALG00000000814 Gallus gallus ENSGALG00000000814 D 0.842
SYNCRIP Gasterosteus aculeatus ENSGACG00000011665 I 0.920
SYNCRIP Gasterosteus aculeatus ENSGACG00000009124 I 0.911
HNRNPR Gasterosteus aculeatus ENSGACG00000003202 I 0.830
SYNCRIP Gorilla gorilla ENSGGOG00000012898 I 1.000
HNRNPR Gorilla gorilla ENSGGOG00000013250 I 0.847
HNRNPR Homo sapiens ENSG00000125944 I 0.847
SYNCRIP Loxodonta africana ENSLAFG00000018172 I 1.000
HNRNPR Loxodonta africana ENSLAFG00000012793 I 0.847
HNRNPR Macaca mulatta ENSMMUG00000010970 I 0.847
SYNCRIP Macaca mulatta ENSMMUG00000012575 I 1.000
HNRNPR Macropus eugenii ENSMEUG00000003769 I 0.726
HNRNPR Meleagris gallopavo ENSMGAG00000001000 I 0.842
SYNCRIP Meleagris gallopavo ENSMGAG00000013690 I 0.995
SYNCRIP Microcebus murinus ENSMICG00000007192 I 1.000
XM_001366708.1 Monodelphis domestica ENSMODG00000018345 I 1.000
HNRNPR Monodelphis domestica ENSMODG00000016144 I 0.842
XM_001362737.1 Monodelphis domestica ENSMODG00000000609 I 1.000
Syncrip Mus musculus ENSMUSG00000032423 I 0.995
Hnrnpr Mus musculus ENSMUSG00000066037 I 0.847
SYNCRIP Myotis lucifugus ENSMLUG00000006919 I 0.990
HNRNPR Myotis lucifugus ENSMLUG00000007582 I 0.799
HNRNPR Ochotona princeps ENSOPRG00000014561 I 0.756
SYNCRIP Ochotona princeps ENSOPRG00000010624 I 0.730
HNRNPR Ornithorhynchus anatinus ENSOANG00000003961 I 0.847
SYNCRIP Ornithorhynchus anatinus ENSOANG00000010099 I 0.990
HNRNPR Oryctolagus cuniculus ENSOCUG00000006686 I 0.839
SYNCRIP Oryctolagus cuniculus ENSOCUG00000000601 I 1.000
HNRNPR Oryzias latipes ENSORLG00000002515 I 0.813
SYNCRIP Oryzias latipes ENSORLG00000014840 I 0.896
SYNCRIP Oryzias latipes ENSORLG00000009190 I 0.900
HNRNPR Otolemur garnettii ENSOGAG00000009179 I 0.820
SYNCRIP Otolemur garnettii ENSOGAG00000001721 I 0.825
XR_022081.1 Pan troglodytes ENSPTRG00000018393 I 1.000
HNRNPR Pan troglodytes ENSPTRG00000000324 I 0.834
ENSPPYG00000016819 Pongo pygmaeus ENSPPYG00000016819 I 1.000
ENSPPYG00000001744 Pongo pygmaeus ENSPPYG00000001744 I 0.847
HNRNPR Procavia capensis ENSPCAG00000010462 I 0.731
SYNCRIP Pteropus vampyrus ENSPVAG00000011888 I 1.000
HNRNPR Pteropus vampyrus ENSPVAG00000014804 I 0.834
Syncrip Rattus norvegicus ENSRNOG00000000204 I 0.995
Hnrnpr Rattus norvegicus ENSRNOG00000011910 I 0.847
HNRNPR Sorex araneus ENSSARG00000001732 I 0.834
SYNCRIP Sorex araneus ENSSARG00000005967 I 1.000
SYNCRIP Sus scrofa ENSSSCG00000004294 I 1.000
HNRNPR Taeniopygia guttata ENSTGUG00000000880 I 0.842
SYNCRIP Takifugu rubripes ENSTRUG00000014766 I 0.901
HNRNPR Takifugu rubripes ENSTRUG00000008817 I 0.806
SYNCRIP Takifugu rubripes ENSTRUG00000005365 I 0.901
SYNCRIP Tarsius syrichta ENSTSYG00000013305 I 1.000
HNRNPR Tetraodon nigroviridis ENSTNIG00000017576 I 0.810
SYNCRIP Tetraodon nigroviridis ENSTNIG00000017299 I 0.901
SYNCRIP Tetraodon nigroviridis ENSTNIG00000002821 I 0.901
HNRNPR Tupaia belangeri ENSTBEG00000002251 I 0.834
HNRNPR Tursiops truncatus ENSTTRG00000007752 I 0.776
SYNCRIP Vicugna pacos ENSVPAG00000001061 I 1.000
AAH70529 Xenopus laevis AAH70529 I 0.960
AAI61702 Xenopus laevis AAI61702 I 0.881
ENSXETG00000018075 Xenopus tropicalis ENSXETG00000018075 D 0.970
ENSXETG00000007102 Xenopus tropicalis ENSXETG00000007102 D 0.881