Rbm39 (Mus musculus)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSMUSG00000027620 T39284_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
ENSMUSP00000029149 RRM 155 223
ENSMUSP00000029149 RRM 252 322
ENSMUSP00000029149 RRM 439 496
ENSMUSP00000105216 RRM 155 223
ENSMUSP00000105216 RRM 252 322
ENSMUSP00000105216 RRM 445 502
ENSMUSP00000116820 RRM 155 223
ENSMUSP00000116820 RRM 252 322
ENSMUSP00000116950 RRM 154 222
ENSMUSP00000116950 RRM 251 273
ENSMUSP00000117462 RRM 17 85
ENSMUSP00000117462 RRM 114 140
ENSMUSP00000117462 RRM 137 162
ENSMUSP00000119298 RRM 155 223
ENSMUSP00000119298 RRM 252 322
ENSMUSP00000119298 RRM 439 496

Links

Other RRM family RBPs
Other Mus musculus RBPs

102 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
DGIL_AUG5s7518g10t1 Acyrtosiphon pisum DGIL_AUG5s7518g10t1 N 0.745
AAEL005046 Aedes aegypti AAEL005046 N 0.771
Ame_R014613 Ailuropoda melanoleuca Ame_R014613 N 0.879
Ame_R004270 Ailuropoda melanoleuca Ame_R004270 N 1.000
RBM23 Anolis carolinensis ENSACAG00000001569 N 0.836
RBM39 Anolis carolinensis ENSACAG00000006436 N 0.990
AGAP008433 Anopheles gambiae AGAP008433 N 0.745
amel4_ncbi_hmm11379 Apis mellifera amel4_ncbi_hmm11379 N 0.765
BGIBMGA006208 Bombyx mori BGIBMGA006208 N 0.771
Q2HJD8_BOVIN Bos taurus ENSBTAG00000003949 N 1.000
Q0IIK8_BOVIN Bos taurus ENSBTAG00000038333 N 0.871
e_gw.57.85.1 Branchiostoma floridae e_gw.57.85.1 N 0.709
B0KWM7_CALJA Callithrix jacchus ENSCJAG00000017535 N 1.000
RBM23 Callithrix jacchus ENSCJAG00000008482 N 0.864
RBM39 Canis familiaris ENSCAFG00000008327 N 1.000
RBM23 Canis familiaris ENSCAFG00000011217 N 0.879
ENSCPOG00000021775 Cavia porcellus ENSCPOG00000021775 N 0.889
RBM39 Cavia porcellus ENSCPOG00000014625 N 0.925
RBM23 Choloepus hoffmanni ENSCHOG00000004460 N 0.713
CpipJ_CPIJ014704 Culex pipiens CpipJ_CPIJ014704 N 0.774
CpipJ_CPIJ019416 Culex pipiens CpipJ_CPIJ019416 N 0.774
CPIJ019416 Culex quinquefasciatus CPIJ019416 N 0.774
CPIJ014704 Culex quinquefasciatus CPIJ014704 N 0.774
rbm39b Danio rerio ENSDARG00000041853 N 0.899
rbm39a Danio rerio ENSDARG00000011613 N 0.904
estExt_Genewise1Plus.C_150014 Daphnia pulex estExt_Genewise1Plus.C_150014 N 0.764
RBM39 Dasypus novemcinctus ENSDNOG00000025219 N 0.763
ENSDORG00000004926 Dipodomys ordii ENSDORG00000004926 N 0.871
GF14957 Drosophila ananassae FBgn0091982 N 0.734
GG10454 Drosophila erecta FBgn0102763 N 0.734
GH13506 Drosophila grimshawi FBgn0120982 N 0.740
CG11266 Drosophila melanogaster FBgn0031883 N 0.734
GI10246 Drosophila mojavensis FBgn0133011 N 0.725
GA10876-RA Drosophila pseudoobscura FBgn0070932 N 0.729
GM16278 Drosophila sechellia FBgn0171194 N 0.734
GD23448 Drosophila simulans FBgn0194830 N 0.734
GJ18017 Drosophila virilis FBgn0205182 N 0.716
GK15272 Drosophila willistoni FBgn0217277 N 0.740
GE14328 Drosophila yakuba FBgn0231943 N 0.739
RBM39 Echinops telfairi ENSETEG00000016295 N 0.889
LOC100052786 Equus caballus ENSECAG00000009910 N 0.879
RBM39 Equus caballus ENSECAG00000013423 N 1.000
RBM39 Erinaceus europaeus ENSEEUG00000004390 N 1.000
RBM23 Erinaceus europaeus ENSEEUG00000015560 N 0.850
RBM23 Felis catus ENSFCAG00000006632 N 0.721
RBM39 Gallus gallus ENSGALG00000001550 N 0.995
RBM23 Gasterosteus aculeatus ENSGACG00000002797 N 0.869
RBM23 Gasterosteus aculeatus ENSGACG00000003376 N 0.879
RBM23 Gorilla gorilla ENSGGOG00000015707 N 0.879
RBM39 Gorilla gorilla ENSGGOG00000003950 N 0.975
RBM23 Homo sapiens ENSG00000100461 N 0.879
RBM39 Homo sapiens ENSG00000131051 N 1.000
estExt_Genewise1.C_sca_90322 Lottia gigantea estExt_Genewise1.C_sca_90322 N 0.768
RBM39 Loxodonta africana ENSLAFG00000010346 N 1.000
RBM23 Loxodonta africana ENSLAFG00000018567 N 0.857
LOC710066 Macaca mulatta ENSMMUG00000018381 N 0.879
RBM39 Meleagris gallopavo ENSMGAG00000001509 N 0.990
RBM39 Microcebus murinus ENSMICG00000001668 N 1.000
RBM23 Microcebus murinus ENSMICG00000006364 N 0.871
RBM39 Monodelphis domestica ENSMODG00000001557 N 0.990
RBM23 Monodelphis domestica ENSMODG00000024448 N 0.857
RBM23 Myotis lucifugus ENSMLUG00000012923 N 0.850
fgenesh1_pg.scaffold_245000036 Nematostella vectensis fgenesh1_pg.scaffold_245000036 N 0.700
RBM39 Ochotona princeps ENSOPRG00000002183 N 1.000
RBM23 Ochotona princeps ENSOPRG00000001092 N 0.851
RBM23 Oryctolagus cuniculus ENSOCUG00000002006 N 0.858
B7NZJ5_RABIT Oryctolagus cuniculus ENSOCUG00000007050 N 1.000
RBM23 Oryzias latipes ENSORLG00000010370 N 0.900
RBM23 Oryzias latipes ENSORLG00000009919 N 0.909
RBM23 Otolemur garnettii ENSOGAG00000014794 N 0.882
RBM39 Otolemur garnettii ENSOGAG00000011227 N 0.924
RBM23 Pan troglodytes ENSPTRG00000006151 N 0.871
RBM39 Pan troglodytes ENSPTRG00000013449 N 1.000
PHUM394230 Pediculus humanus PHUM394230 N 0.770
ENSPPYG00000005649 Pongo pygmaeus ENSPPYG00000005649 N 0.879
ENSPPYG00000010963 Pongo pygmaeus ENSPPYG00000010963 N 1.000
RBM39 Procavia capensis ENSPCAG00000008764 N 0.889
RBM39 Pteropus vampyrus ENSPVAG00000014944 N 1.000
RBM23 Pteropus vampyrus ENSPVAG00000013785 N 0.871
Rbm39 Rattus norvegicus ENSRNOG00000019848 N 1.000
RBM23 Sorex araneus ENSSARG00000005165 N 0.850
RBM39 Sorex araneus ENSSARG00000007673 N 1.000
RBM23 Spermophilus tridecemlineatus ENSSTOG00000010354 N 0.757
RBM39 Sus scrofa ENSSSCG00000007309 N 1.000
RBM39 Taeniopygia guttata ENSTGUG00000003048 N 0.995
RBM23 Takifugu rubripes ENSTRUG00000011352 N 0.900
RBM23 Tarsius syrichta ENSTSYG00000014755 N 0.730
RBM39 Tarsius syrichta ENSTSYG00000005605 N 1.000
RBM23 Tetraodon nigroviridis ENSTNIG00000017904 N 0.894
RBM23 Tetraodon nigroviridis ENSTNIG00000005223 N 0.803
RBM23 Tupaia belangeri ENSTBEG00000011543 N 0.893
RBM39 Tupaia belangeri ENSTBEG00000017320 N 0.859
RBM39 Tursiops truncatus ENSTTRG00000017039 N 1.000
RBM23 Tursiops truncatus ENSTTRG00000001500 N 0.879
RBM23 Vicugna pacos ENSVPAG00000000599 N 0.709
RBM39 Vicugna pacos ENSVPAG00000003819 N 0.993
AAH73374 Xenopus laevis AAH73374 N 0.829
AAH75146 Xenopus laevis AAH75146 N 0.955
AAH77813 Xenopus laevis AAH77813 N 0.960
rbm23 Xenopus tropicalis ENSXETG00000022623 N 0.857
rbm39 Xenopus tropicalis ENSXETG00000007434 N 0.965