estExt_Genemark1.C_60101 (Coccomyxa C 169)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 estExt_Genemark1.C_60101 T56402_0.6 Superfamily (2011-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
estExt_gwp_gw1.C_700168
M205_0.6 		Physcomitrella patens WUGGAG RNAcompete
Ray et al.(2013)
RNCMPT00237 		0.818
sf3b4
M195_0.6 		Danio rerio CAAAAG RNAcompete
Ray et al.(2013)
RNCMPT00224 		0.757
Smp_067420
M201_0.6 		Schistosoma mansoni DWWUUUU RNAcompete
Ray et al.(2013)
RNCMPT00232 		0.734
sap-49
M261_0.6 		Caenorhabditis elegans CGUGUGAG SELEX
Cook et al.(2011)
145_9163526 		0.713
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
estExt_Genemark1.C_60101 RRM 31 101
estExt_Genemark1.C_60101 RRM 118 189

Links

Other RRM family RBPs
Other Coccomyxa C 169 RBPs

119 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
DGIL_AUG5s13542g6t1 Acyrtosiphon pisum DGIL_AUG5s13542g6t1 I 0.762
AAEL013795 Aedes aegypti AAEL013795 I 0.762
Ame_R019118 Ailuropoda melanoleuca Ame_R019118 I 0.769
ENSACAG00000010019 Anolis carolinensis ENSACAG00000010019 I 0.769
AGAP001538 Anopheles gambiae AGAP001538 I 0.762
amel4_ncbi_hmm1889 Apis mellifera amel4_ncbi_hmm1889 I 0.769
XM_002883791.1 Arabidopsis lyrata Al_scaffold_0003_3307 I 0.720
XM_002886132.1 Arabidopsis lyrata fgenesh2_kg.3__3460__AT2G18510.1 I 0.811
emb2444 Arabidopsis thaliana AT2G18510-TAIR-G I 0.790
59062 Aureococcus anophagefferens 59062 I 0.706
estExt_fgenesh1_pm.C_120017 Batrachochytrium dendrobatidis estExt_fgenesh1_pm.C_120017 N 0.706
Q3MHE6_BOVIN Bos taurus ENSBTAG00000012495 I 0.769
ENSBTAG00000012793 Bos taurus ENSBTAG00000012793 I 0.762
BRADI3G27920 Brachypodium distachyon BRADI3G27920 I 0.825
estExt_fgenesh2_pm.C_9540001 Branchiostoma floridae estExt_fgenesh2_pm.C_9540001 I 0.769
fgenesh2_pg.scaffold_36000101 Branchiostoma floridae fgenesh2_pg.scaffold_36000101 I 0.769
Bm1_43460 Brugia malayi Bm1_43460 I 0.720
CBN06124 Caenorhabditis brenneri CBN06124 I 0.713
sap-49 Caenorhabditis elegans C08B11.5 D 0.713
CRE01639 Caenorhabditis remanei CRE01639 I 0.713
A6MKC5_CALJA Callithrix jacchus ENSCJAG00000000793 I 0.769
ENSCAFG00000005753 Canis familiaris ENSCAFG00000005753 I 0.734
ENSCAFG00000011617 Canis familiaris ENSCAFG00000011617 I 0.769
PK08238.1 Cannabis sativa PK08238.1 I 0.832
estExt_Genewise1.C_230076 Capitella teleta estExt_Genewise1.C_230076 I 0.720
ENSCPOG00000008267 Cavia porcellus ENSCPOG00000008267 I 0.769
FER_chlre3.3.376.1.5 Chlamydomonas reinhardtii FER_chlre3.3.376.1.5 I 0.839
gw1.3.260.1 Chlorella NC64A gw1.3.260.1 I 0.790
estExt_Genewise1.C_60440 Chlorella vulgaris estExt_Genewise1.C_60440 I 1.000
Cucsa.251850 Cucumis sativus Cucsa.251850 I 0.825
CpipJ_CPIJ014149 Culex pipiens CpipJ_CPIJ014149 I 0.762
CPIJ014149 Culex quinquefasciatus CPIJ014149 I 0.762
sf3b4 Danio rerio ENSDARG00000018574 D 0.769
e_gw1.1.857.1 Daphnia pulex e_gw1.1.857.1 I 0.762
GF20385 Drosophila ananassae FBgn0097392 I 0.755
GG19577 Drosophila erecta FBgn0111779 I 0.755
GH17589 Drosophila grimshawi FBgn0125059 I 0.762
Spx Drosophila melanogaster FBgn0015818 I 0.748
GI16317 Drosophila mojavensis FBgn0139065 I 0.762
GL21313 Drosophila persimilis FBgn0158906 I 0.755
GA17684-RA Drosophila pseudoobscura FBgn0077694 I 0.755
GM12470 Drosophila sechellia FBgn0167407 I 0.748
GJ15655 Drosophila virilis FBgn0202845 I 0.762
GK19717 Drosophila willistoni FBgn0221715 I 0.755
GE16738 Drosophila yakuba FBgn0234234 I 0.755
estExtDG_fgenesh_newKGs_kg.C_520059 Emiliania huxleyi estExtDG_fgenesh_newKGs_kg.C_520059 I 0.734
LOC100054350 Equus caballus ENSECAG00000024737 I 0.769
ENSFCAG00000010106 Felis catus ENSFCAG00000010106 I 0.769
SF3B4 Gallus gallus ENSGALG00000013352 I 0.769
SF3B4 Gasterosteus aculeatus ENSGACG00000003819 I 0.769
Glyma12g36950.1 Glycine max Glyma12g36950.1 I 0.832
Glyma09g00310.1 Glycine max Glyma09g00310.1 I 0.832
SF3B4 Gorilla gorilla ENSGGOG00000004761 I 0.769
99199 Helobdella robusta 99199 I 0.734
SF3B4 Homo sapiens ENSG00000143368 I 0.769
XP_002157695.1 Hydra magnipapillata XP_002157695.1 I 0.755
ISCW010601 Ixodes scapularis ISCW010601 I 0.755
LOAG_01189 Loa loa LOAG_01189 I 0.720
estExt_Genewise1.C_sca_2060028 Lottia gigantea estExt_Genewise1.C_sca_2060028 I 0.755
ENSLAFG00000008531 Loxodonta africana ENSLAFG00000008531 I 0.769
SF3B4 Macaca mulatta ENSMMUG00000007256 I 0.769
ENSMEUG00000003272 Macropus eugenii ENSMEUG00000003272 I 0.713
MDP0000320945 Malus x domestica MDP0000320945 I 0.825
MDP0000131129 Malus x domestica MDP0000131129 I 0.825
cassava31033.valid.m1 Manihot esculenta cassava31033.valid.m1 I 0.818
Medtr3g087340 Medicago truncatula Medtr3g087340 I 0.832
ENSMGAG00000000653 Meleagris gallopavo ENSMGAG00000000653 I 0.769
SF3B4 Microcebus murinus ENSMICG00000000296 I 0.769
e_gw1.3.432.1 Micromonas pusilla e_gw1.3.432.1 I 0.755
ENSMODG00000018767 Monodelphis domestica ENSMODG00000018767 I 0.769
estExt_fgenesh1_pg.C_220114 Monosiga brevicollis estExt_fgenesh1_pg.C_220114 I 0.713
estExt_Genewise1Plus.C_20198 Mucor circinelloides estExt_Genewise1Plus.C_20198 I 0.720
Sf3b4 Mus musculus ENSMUSG00000068856 I 0.769
ENSMLUG00000010789 Myotis lucifugus ENSMLUG00000010789 I 0.769
nasonia_NCBI_hmm192414 Nasonia vitripennis nasonia_NCBI_hmm192414 I 0.776
estExt_gwp.C_590193 Nematostella vectensis estExt_gwp.C_590193 I 0.762
ENSOPRG00000010808 Ochotona princeps ENSOPRG00000010808 I 0.769
SNAPOd2T00022637001 Oikopleura dioica SNAPOd2T00022637001 I 0.762
ENSOCUG00000004614 Oryctolagus cuniculus ENSOCUG00000004614 I 0.769
BGIOSIBCE032328 Oryza indica BGIOSIBCE032328 I 0.839
LOC_Os10g31900 Oryza sativa LOC_Os10g31900 I 0.839
SF3B4 Oryzias latipes ENSORLG00000003062 I 0.769
e_gwEuk.5.259.1 Ostreococcus lucimarinus e_gwEuk.5.259.1 I 0.783
gw1.5.900.1 Ostreococcus RCC809 gw1.5.900.1 I 0.783
gw1.05.00.253.1 Ostreococcus tauri gw1.05.00.253.1 I 0.762
SF3B4 Otolemur garnettii ENSOGAG00000006265 I 0.769
SF3B4 Pan troglodytes ENSPTRG00000001243 I 0.769
PHUM263440 Pediculus humanus PHUM263440 I 0.748
estExt_Genewise1Plus.C_330054 Phycomyces blakesleeanus estExt_Genewise1Plus.C_330054 I 0.727
estExt_gwp_gw1.C_700168 Physcomitrella patens estExt_gwp_gw1.C_700168 D 0.818
B9HEU6_POPTR Populus trichocarpa POPTR_0007s12570 I 0.832
ENSPCAG00000000392 Procavia capensis ENSPCAG00000000392 I 0.762
ppa007508m Prunus persica ppa007508m I 0.825
ENSPVAG00000014171 Pteropus vampyrus ENSPVAG00000014171 I 0.769
Sf3b4 Rattus norvegicus ENSRNOG00000021181 I 0.769
RO3G_10200 Rhizopus oryzae RO3G_10200 I 0.706
30183.m001303 Ricinus communis 30183.m001303 I 0.818
PTSG_00878 Salpingoeca rosetta PTSG_00878 I 0.727
Smp_067420 Schistosoma mansoni Smp_067420 D 0.734
SB01G020190 Sorghum bicolor Sb01g020190 I 0.839
ENSSTOG00000006570 Spermophilus tridecemlineatus ENSSTOG00000006570 I 0.752
SPPG_04182 Spizellomyces punctatus SPPG_04182 I 0.755
XP_001185838.1 Strongylocentrotus purpuratus XP_001185838.1 I 0.727
XP_784135.2 Strongylocentrotus purpuratus XP_784135.2 I 0.727
ENSSSCG00000006665 Sus scrofa ENSSSCG00000006665 I 0.769
SF3B4 Taeniopygia guttata ENSTGUG00000004470 I 0.769
SF3B4 Takifugu rubripes ENSTRUG00000004516 I 0.769
SF3B4 Tarsius syrichta ENSTSYG00000009295 I 0.769
SF3B4 Tetraodon nigroviridis ENSTNIG00000009156 I 0.769
e_gw1.6.938.1 Trichoplax adhaerens e_gw1.6.938.1 I 0.755
ENSTTRG00000005217 Tursiops truncatus ENSTTRG00000005217 I 0.769
ENSVPAG00000008152 Vicugna pacos ENSVPAG00000008152 I 0.769
GSVIVG00018991001 Vitis vinifera GSVIVG00018991001 I 0.825
WUBG_01785 Wuchereria bancrofti WUBG_01785 I 0.720
AAH45264 Xenopus laevis AAH45264 I 0.776
AAH77458 Xenopus laevis AAH77458 I 0.776
sf3b4 Xenopus tropicalis ENSXETG00000011038 I 0.769
GRMZM2G170699 Zea mays GRMZM2G170699 I 0.832
GRMZM2G102639 Zea mays GRMZM2G102639 I 0.825