MDP0000176892 (Malus x domestica)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 MDP0000176892 T57389_0.6 Superfamily (2011-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
MDP0000176892 RRM 105 186
MDP0000176892 RRM 210 281
MDP0000176892 RRM 324 388

Links

Other RRM family RBPs
Other Malus x domestica RBPs

43 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
XM_002885248.1 Arabidopsis lyrata fgenesh2_kg.3__2129__AT3G19130.1 I 0.712
XM_002894151.1 Arabidopsis lyrata fgenesh2_kg.1__4049__AT1G49600.1 I 0.717
XM_002891318.1 Arabidopsis lyrata fgenesh2_kg.1__3846__AT1G47500.1 N 0.753
ATRBP47C Arabidopsis thaliana AT1G47490-TAIR-G N 0.740
ATRBP47A Arabidopsis thaliana AT1G49600-TAIR-G I 0.712
ATRBP47B Arabidopsis thaliana AT3G19130-TAIR-G I 0.712
BRADI4G32380 Brachypodium distachyon BRADI4G32380 N 0.712
PK00840.1 Cannabis sativa PK00840.1 I 0.850
PK15272.1 Cannabis sativa PK15272.1 I 0.731
Cucsa.232650 Cucumis sativus Cucsa.232650 I 0.817
Cucsa.123510 Cucumis sativus Cucsa.123510 I 0.827
Glyma06g04100.1 Glycine max Glyma06g04100.1 I 0.798
Glyma14g08840.1 Glycine max Glyma14g08840.1 I 0.858
Glyma02g15190.1 Glycine max Glyma02g15190.1 I 0.731
Glyma17g36330.1 Glycine max Glyma17g36330.1 I 0.858
Glyma07g33300.1 Glycine max Glyma07g33300.1 I 0.740
Glyma04g03950.1 Glycine max Glyma04g03950.1 I 0.845
chr4.CM0079.170.nc Lotus japonicus chr4.CM0079.170.nc I 0.731
chr5.CM0089.1140.nc Lotus japonicus chr5.CM0089.1140.nc I 0.854
MDP0000200455 Malus x domestica MDP0000200455 I 0.918
MDP0000136330 Malus x domestica MDP0000136330 I 0.918
cassava1152.valid.m1 Manihot esculenta cassava1152.valid.m1 I 0.731
cassava35506.valid.m1 Manihot esculenta cassava35506.valid.m1 I 0.854
Medtr3g148180 Medicago truncatula Medtr3g148180 I 0.808
Medtr4g129250 Medicago truncatula Medtr4g129250 I 0.708
mgf013285m Mimulus guttatus mgf013285m N 0.749
mgf012795m Mimulus guttatus mgf012795m I 0.753
mgf011075m Mimulus guttatus mgf011075m I 0.703
LOC_Os09g28810 Oryza sativa LOC_Os09g28810 I 0.717
B9GNX9_POPTR Populus trichocarpa POPTR_0002s12960 I 0.849
B9N4W3_POPTR Populus trichocarpa POPTR_0004s15080 I 0.749
B9HRX8_POPTR Populus trichocarpa POPTR_0009s10820 I 0.721
B9MVK8_POPTR Populus trichocarpa POPTR_0014s03390 I 0.854
ppa005661m Prunus persica ppa005661m I 0.740
ppa005903m Prunus persica ppa005903m I 0.909
30170.m014217 Ricinus communis 30170.m014217 I 0.854
29801.m003218 Ricinus communis 29801.m003218 I 0.731
Sb02g026820 Sorghum bicolor Sb02g026820 I 0.721
GSVIVG00009558001 Vitis vinifera GSVIVG00009558001 I 0.808
GSVIVG00031780001 Vitis vinifera GSVIVG00031780001 I 0.763
GRMZM2G467907 Zea mays GRMZM2G467907 I 0.712
GRMZM2G168163 Zea mays GRMZM2G168163 I 0.708