XM_002894151.1 (Arabidopsis lyrata)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 fgenesh2_kg.1__4049__AT1G49600.1 T44493_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
gw1.219.6.1_CONSTRUCT
M199_0.6 		RNAcompete CONSTRUCTS UGUUUUD RNAcompete
Ray et al.(2013)
RNCMPT00229 		0.720
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
fgenesh2_kg.1__4049__AT1G49600.1 RRM 126 195
fgenesh2_kg.1__4049__AT1G49600.1 RRM 220 291
fgenesh2_kg.1__4049__AT1G49600.1 RRM 334 398

Links

Other RRM family RBPs
Other Arabidopsis lyrata RBPs

47 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
ATRBP47A Arabidopsis thaliana AT1G49600-TAIR-G I 0.995
XM_002885248.1 Arabidopsis lyrata fgenesh2_kg.3__2129__AT3G19130.1 I 0.850
ATRBP47B Arabidopsis thaliana AT3G19130-TAIR-G I 0.836
B9N4W3_POPTR Populus trichocarpa POPTR_0004s15080 I 0.816
ppa005661m Prunus persica ppa005661m I 0.802
GSVIVG00031780001 Vitis vinifera GSVIVG00031780001 I 0.797
PK15272.1 Cannabis sativa PK15272.1 I 0.792
Glyma07g33300.1 Glycine max Glyma07g33300.1 I 0.787
B9HRX8_POPTR Populus trichocarpa POPTR_0009s10820 I 0.787
Glyma02g15190.1 Glycine max Glyma02g15190.1 I 0.783
cassava1152.valid.m1 Manihot esculenta cassava1152.valid.m1 I 0.773
chr4.CM0079.170.nc Lotus japonicus chr4.CM0079.170.nc I 0.768
29801.m003218 Ricinus communis 29801.m003218 I 0.763
MDP0000200455 Malus x domestica MDP0000200455 I 0.758
MDP0000136330 Malus x domestica MDP0000136330 I 0.758
ppa005903m Prunus persica ppa005903m I 0.754
Cucsa.123510 Cucumis sativus Cucsa.123510 I 0.750
chr5.CM0089.1140.nc Lotus japonicus chr5.CM0089.1140.nc I 0.749
Medtr4g129250 Medicago truncatula Medtr4g129250 I 0.749
mgf000380m Mimulus guttatus mgf000380m I 0.744
Glyma04g03950.1 Glycine max Glyma04g03950.1 I 0.744
cassava35506.valid.m1 Manihot esculenta cassava35506.valid.m1 I 0.744
Cucsa.232650 Cucumis sativus Cucsa.232650 I 0.739
30170.m014217 Ricinus communis 30170.m014217 I 0.739
Medtr3g148180 Medicago truncatula Medtr3g148180 I 0.739
Glyma17g36330.1 Glycine max Glyma17g36330.1 I 0.739
B9MVK8_POPTR Populus trichocarpa POPTR_0014s03390 I 0.734
Glyma14g08840.1 Glycine max Glyma14g08840.1 I 0.729
XM_002891318.1 Arabidopsis lyrata fgenesh2_kg.1__3846__AT1G47500.1 N 0.729
GSVIVG00009558001 Vitis vinifera GSVIVG00009558001 I 0.725
gw1.219.6.1 Physcomitrella patens gw1.219.6.1 I 0.720
B9GNX9_POPTR Populus trichocarpa POPTR_0002s12960 I 0.720
estExt_Genewise1.C_3910068 Physcomitrella patens estExt_Genewise1.C_3910068 I 0.720
gw1.339.2.1 Physcomitrella patens gw1.339.2.1 I 0.720
MDP0000176892 Malus x domestica MDP0000176892 N 0.717
PK00840.1 Cannabis sativa PK00840.1 I 0.716
GRMZM2G168163 Zea mays GRMZM2G168163 I 0.715
Sb02g026820 Sorghum bicolor Sb02g026820 I 0.715
GRMZM2G467907 Zea mays GRMZM2G467907 I 0.705
mgf011075m Mimulus guttatus mgf011075m I 0.705
ATRBP47C Arabidopsis thaliana AT1G47490-TAIR-G N 0.705
Glyma06g04100.1 Glycine max Glyma06g04100.1 I 0.701
LOC_Os09g28810 Oryza sativa LOC_Os09g28810 I 0.700
mgf012795m Mimulus guttatus mgf012795m I 0.700
MDP0000142206 Malus x domestica MDP0000142206 N 0.700
Cucsa.085910 Cucumis sativus Cucsa.085910 I 0.700