MDP0000136330 (Malus x domestica)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 MDP0000136330 T57330_0.6 Superfamily (2011-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
gw1.219.6.1_CONSTRUCT
M199_0.6 		RNAcompete CONSTRUCTS UGUUUUD RNAcompete
Ray et al.(2013)
RNCMPT00229 		0.739
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
MDP0000136330 RRM 309 378
MDP0000136330 RRM 402 473
MDP0000136330 RRM 516 580

Links

Other RRM family RBPs
Other Malus x domestica RBPs

52 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
MDP0000200455 Malus x domestica MDP0000200455 I 1.000
ppa005903m Prunus persica ppa005903m I 0.966
MDP0000176892 Malus x domestica MDP0000176892 N 0.918
B9MVK8_POPTR Populus trichocarpa POPTR_0014s03390 I 0.913
Glyma14g08840.1 Glycine max Glyma14g08840.1 I 0.913
Glyma17g36330.1 Glycine max Glyma17g36330.1 I 0.913
chr5.CM0089.1140.nc Lotus japonicus chr5.CM0089.1140.nc I 0.908
B9GNX9_POPTR Populus trichocarpa POPTR_0002s12960 I 0.908
cassava35506.valid.m1 Manihot esculenta cassava35506.valid.m1 I 0.908
30170.m014217 Ricinus communis 30170.m014217 I 0.908
PK00840.1 Cannabis sativa PK00840.1 I 0.899
Glyma04g03950.1 Glycine max Glyma04g03950.1 I 0.899
Cucsa.123510 Cucumis sativus Cucsa.123510 I 0.885
Cucsa.232650 Cucumis sativus Cucsa.232650 I 0.870
Medtr3g148180 Medicago truncatula Medtr3g148180 I 0.865
GSVIVG00009558001 Vitis vinifera GSVIVG00009558001 I 0.850
Glyma06g04100.1 Glycine max Glyma06g04100.1 I 0.848
GSVIVG00031780001 Vitis vinifera GSVIVG00031780001 I 0.807
B9N4W3_POPTR Populus trichocarpa POPTR_0004s15080 I 0.792
mgf012795m Mimulus guttatus mgf012795m I 0.792
Glyma07g33300.1 Glycine max Glyma07g33300.1 I 0.787
ppa005661m Prunus persica ppa005661m I 0.787
mgf013285m Mimulus guttatus mgf013285m N 0.783
cassava1152.valid.m1 Manihot esculenta cassava1152.valid.m1 I 0.778
Glyma02g15190.1 Glycine max Glyma02g15190.1 I 0.778
chr4.CM0079.170.nc Lotus japonicus chr4.CM0079.170.nc I 0.778
29801.m003218 Ricinus communis 29801.m003218 I 0.778
PK15272.1 Cannabis sativa PK15272.1 I 0.778
XM_002891318.1 Arabidopsis lyrata fgenesh2_kg.1__3846__AT1G47500.1 N 0.776
ATRBP47C Arabidopsis thaliana AT1G47490-TAIR-G N 0.767
B9HRX8_POPTR Populus trichocarpa POPTR_0009s10820 I 0.763
Sb02g026820 Sorghum bicolor Sb02g026820 I 0.763
XM_002894151.1 Arabidopsis lyrata fgenesh2_kg.1__4049__AT1G49600.1 I 0.758
LOC_Os09g28810 Oryza sativa LOC_Os09g28810 I 0.758
Medtr4g129250 Medicago truncatula Medtr4g129250 I 0.754
ATRBP47A Arabidopsis thaliana AT1G49600-TAIR-G I 0.754
GRMZM2G467907 Zea mays GRMZM2G467907 I 0.754
XM_002885248.1 Arabidopsis lyrata fgenesh2_kg.3__2129__AT3G19130.1 I 0.754
BRADI4G32380 Brachypodium distachyon BRADI4G32380 N 0.754
ATRBP47B Arabidopsis thaliana AT3G19130-TAIR-G I 0.754
GRMZM2G168163 Zea mays GRMZM2G168163 I 0.749
mgf011075m Mimulus guttatus mgf011075m I 0.739
gw1.339.2.1 Physcomitrella patens gw1.339.2.1 I 0.739
gw1.219.6.1 Physcomitrella patens gw1.219.6.1 I 0.739
estExt_Genewise1.C_3910068 Physcomitrella patens estExt_Genewise1.C_3910068 I 0.734
mgf000380m Mimulus guttatus mgf000380m I 0.720
XM_002863704.1 Arabidopsis lyrata fgenesh1_pm.C_scaffold_8000474 N 0.708
Glyma17g01800.1 Glycine max Glyma17g01800.1 I 0.705
SB06G018280 Sorghum bicolor Sb06g018280 N 0.700
Glyma13g27570.1 Glycine max Glyma13g27570.1 I 0.700
Glyma07g38940.1 Glycine max Glyma07g38940.1 I 0.700