cassava35506.valid.m1 (Manihot esculenta)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 cassava35506.valid.m1 T49325_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
gw1.219.6.1_CONSTRUCT
M199_0.6 		RNAcompete CONSTRUCTS UGUUUUD RNAcompete
Ray et al.(2013)
RNCMPT00229 		0.744
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
cassava35506.valid.m1 RRM 101 170
cassava35506.valid.m1 RRM 194 265
cassava35506.valid.m1 RRM 304 368

Links

Other RRM family RBPs
Other Manihot esculenta RBPs

56 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
30170.m014217 Ricinus communis 30170.m014217 I 0.937
B9MVK8_POPTR Populus trichocarpa POPTR_0014s03390 I 0.937
B9GNX9_POPTR Populus trichocarpa POPTR_0002s12960 I 0.928
ppa005903m Prunus persica ppa005903m I 0.918
Glyma17g36330.1 Glycine max Glyma17g36330.1 I 0.913
Glyma14g08840.1 Glycine max Glyma14g08840.1 I 0.913
MDP0000200455 Malus x domestica MDP0000200455 I 0.908
MDP0000136330 Malus x domestica MDP0000136330 I 0.908
PK00840.1 Cannabis sativa PK00840.1 I 0.904
Glyma04g03950.1 Glycine max Glyma04g03950.1 I 0.899
chr5.CM0089.1140.nc Lotus japonicus chr5.CM0089.1140.nc I 0.894
Cucsa.232650 Cucumis sativus Cucsa.232650 I 0.870
Glyma06g04100.1 Glycine max Glyma06g04100.1 I 0.858
MDP0000176892 Malus x domestica MDP0000176892 N 0.854
Cucsa.123510 Cucumis sativus Cucsa.123510 I 0.851
Medtr3g148180 Medicago truncatula Medtr3g148180 I 0.831
GSVIVG00009558001 Vitis vinifera GSVIVG00009558001 I 0.826
GSVIVG00031780001 Vitis vinifera GSVIVG00031780001 I 0.792
Glyma07g33300.1 Glycine max Glyma07g33300.1 I 0.792
Glyma02g15190.1 Glycine max Glyma02g15190.1 I 0.787
mgf013285m Mimulus guttatus mgf013285m N 0.783
mgf012795m Mimulus guttatus mgf012795m I 0.783
B9N4W3_POPTR Populus trichocarpa POPTR_0004s15080 I 0.778
ppa005661m Prunus persica ppa005661m I 0.773
Medtr4g129250 Medicago truncatula Medtr4g129250 I 0.773
chr4.CM0079.170.nc Lotus japonicus chr4.CM0079.170.nc I 0.773
Sb02g026820 Sorghum bicolor Sb02g026820 I 0.768
PK15272.1 Cannabis sativa PK15272.1 I 0.763
GRMZM2G467907 Zea mays GRMZM2G467907 I 0.758
BRADI4G32380 Brachypodium distachyon BRADI4G32380 N 0.758
29801.m003218 Ricinus communis 29801.m003218 I 0.758
cassava1152.valid.m1 Manihot esculenta cassava1152.valid.m1 I 0.758
B9HRX8_POPTR Populus trichocarpa POPTR_0009s10820 I 0.754
LOC_Os09g28810 Oryza sativa LOC_Os09g28810 I 0.754
GRMZM2G168163 Zea mays GRMZM2G168163 I 0.754
XM_002891318.1 Arabidopsis lyrata fgenesh2_kg.1__3846__AT1G47500.1 N 0.752
ATRBP47C Arabidopsis thaliana AT1G47490-TAIR-G N 0.752
XM_002894151.1 Arabidopsis lyrata fgenesh2_kg.1__4049__AT1G49600.1 I 0.744
gw1.339.2.1 Physcomitrella patens gw1.339.2.1 I 0.744
mgf011075m Mimulus guttatus mgf011075m I 0.744
gw1.219.6.1 Physcomitrella patens gw1.219.6.1 I 0.744
ATRBP47A Arabidopsis thaliana AT1G49600-TAIR-G I 0.739
estExt_Genewise1.C_3910068 Physcomitrella patens estExt_Genewise1.C_3910068 I 0.734
XM_002885248.1 Arabidopsis lyrata fgenesh2_kg.3__2129__AT3G19130.1 I 0.734
ATRBP47B Arabidopsis thaliana AT3G19130-TAIR-G I 0.729
mgf000380m Mimulus guttatus mgf000380m I 0.725
Cucsa.085920 Cucumis sativus Cucsa.085920 I 0.715
Glyma17g01800.1 Glycine max Glyma17g01800.1 I 0.710
Cucsa.085910 Cucumis sativus Cucsa.085910 I 0.710
BRADI5G22410 Brachypodium distachyon BRADI5G22410 N 0.707
mgf010468m Mimulus guttatus mgf010468m I 0.707
Glyma07g38940.1 Glycine max Glyma07g38940.1 I 0.705
Glyma13g27570.1 Glycine max Glyma13g27570.1 I 0.705
LOC_Os08g09100 Oryza sativa LOC_Os08g09100 N 0.702
Glyma15g11380.1 Glycine max Glyma15g11380.1 I 0.700