Cucsa.232650 (Cucumis sativus)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 Cucsa.232650 T49595_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
gw1.219.6.1_CONSTRUCT
M199_0.6 		RNAcompete CONSTRUCTS UGUUUUD RNAcompete
Ray et al.(2013)
RNCMPT00229 		0.715
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
Cucsa.232650.1 RRM 94 163
Cucsa.232650.1 RRM 187 258
Cucsa.232650.1 RRM 300 364

Links

Other RRM family RBPs
Other Cucumis sativus RBPs

47 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
B9MVK8_POPTR Populus trichocarpa POPTR_0014s03390 I 0.874
ppa005903m Prunus persica ppa005903m I 0.874
MDP0000200455 Malus x domestica MDP0000200455 I 0.870
MDP0000136330 Malus x domestica MDP0000136330 I 0.870
Glyma04g03950.1 Glycine max Glyma04g03950.1 I 0.870
Glyma17g36330.1 Glycine max Glyma17g36330.1 I 0.870
Glyma14g08840.1 Glycine max Glyma14g08840.1 I 0.870
cassava35506.valid.m1 Manihot esculenta cassava35506.valid.m1 I 0.870
Cucsa.123510 Cucumis sativus Cucsa.123510 I 0.865
B9GNX9_POPTR Populus trichocarpa POPTR_0002s12960 I 0.865
30170.m014217 Ricinus communis 30170.m014217 I 0.865
chr5.CM0089.1140.nc Lotus japonicus chr5.CM0089.1140.nc I 0.865
PK00840.1 Cannabis sativa PK00840.1 I 0.861
Glyma06g04100.1 Glycine max Glyma06g04100.1 I 0.829
MDP0000176892 Malus x domestica MDP0000176892 N 0.817
GSVIVG00009558001 Vitis vinifera GSVIVG00009558001 I 0.807
Medtr3g148180 Medicago truncatula Medtr3g148180 I 0.802
cassava1152.valid.m1 Manihot esculenta cassava1152.valid.m1 I 0.792
GSVIVG00031780001 Vitis vinifera GSVIVG00031780001 I 0.778
B9N4W3_POPTR Populus trichocarpa POPTR_0004s15080 I 0.778
ppa005661m Prunus persica ppa005661m I 0.773
Glyma02g15190.1 Glycine max Glyma02g15190.1 I 0.773
Glyma07g33300.1 Glycine max Glyma07g33300.1 I 0.773
B9HRX8_POPTR Populus trichocarpa POPTR_0009s10820 I 0.763
PK15272.1 Cannabis sativa PK15272.1 I 0.763
29801.m003218 Ricinus communis 29801.m003218 I 0.763
mgf012795m Mimulus guttatus mgf012795m I 0.763
Sb02g026820 Sorghum bicolor Sb02g026820 I 0.754
chr4.CM0079.170.nc Lotus japonicus chr4.CM0079.170.nc I 0.749
mgf013285m Mimulus guttatus mgf013285m N 0.749
GRMZM2G467907 Zea mays GRMZM2G467907 I 0.744
XM_002885248.1 Arabidopsis lyrata fgenesh2_kg.3__2129__AT3G19130.1 I 0.739
Medtr4g129250 Medicago truncatula Medtr4g129250 I 0.739
LOC_Os09g28810 Oryza sativa LOC_Os09g28810 I 0.739
XM_002894151.1 Arabidopsis lyrata fgenesh2_kg.1__4049__AT1G49600.1 I 0.739
ATRBP47B Arabidopsis thaliana AT3G19130-TAIR-G I 0.734
GRMZM2G168163 Zea mays GRMZM2G168163 I 0.734
BRADI4G32380 Brachypodium distachyon BRADI4G32380 N 0.734
ATRBP47A Arabidopsis thaliana AT1G49600-TAIR-G I 0.734
XM_002891318.1 Arabidopsis lyrata fgenesh2_kg.1__3846__AT1G47500.1 N 0.733
ATRBP47C Arabidopsis thaliana AT1G47490-TAIR-G N 0.733
mgf011075m Mimulus guttatus mgf011075m I 0.720
estExt_Genewise1.C_3910068 Physcomitrella patens estExt_Genewise1.C_3910068 I 0.720
gw1.219.6.1 Physcomitrella patens gw1.219.6.1 I 0.715
gw1.339.2.1 Physcomitrella patens gw1.339.2.1 I 0.715
mgf000380m Mimulus guttatus mgf000380m I 0.710