ppa005903m (Prunus persica)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ppa005903m T58365_0.6 Superfamily (2011-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
gw1.219.6.1_CONSTRUCT
M199_0.6 		RNAcompete CONSTRUCTS UGUUUUD RNAcompete
Ray et al.(2013)
RNCMPT00229 		0.754
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ppa005903m RRM 102 171
ppa005903m RRM 195 266
ppa005903m RRM 309 373

Links

Other RRM family RBPs
Other Prunus persica RBPs

60 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
MDP0000136330 Malus x domestica MDP0000136330 I 0.966
MDP0000200455 Malus x domestica MDP0000200455 I 0.966
B9MVK8_POPTR Populus trichocarpa POPTR_0014s03390 I 0.918
Glyma14g08840.1 Glycine max Glyma14g08840.1 I 0.918
Glyma17g36330.1 Glycine max Glyma17g36330.1 I 0.918
cassava35506.valid.m1 Manihot esculenta cassava35506.valid.m1 I 0.918
PK00840.1 Cannabis sativa PK00840.1 I 0.913
B9GNX9_POPTR Populus trichocarpa POPTR_0002s12960 I 0.913
30170.m014217 Ricinus communis 30170.m014217 I 0.913
chr5.CM0089.1140.nc Lotus japonicus chr5.CM0089.1140.nc I 0.913
MDP0000176892 Malus x domestica MDP0000176892 N 0.909
Glyma04g03950.1 Glycine max Glyma04g03950.1 I 0.903
Cucsa.123510 Cucumis sativus Cucsa.123510 I 0.885
Cucsa.232650 Cucumis sativus Cucsa.232650 I 0.874
Medtr3g148180 Medicago truncatula Medtr3g148180 I 0.865
GSVIVG00009558001 Vitis vinifera GSVIVG00009558001 I 0.860
Glyma06g04100.1 Glycine max Glyma06g04100.1 I 0.853
GSVIVG00031780001 Vitis vinifera GSVIVG00031780001 I 0.812
mgf012795m Mimulus guttatus mgf012795m I 0.807
mgf013285m Mimulus guttatus mgf013285m N 0.797
Glyma07g33300.1 Glycine max Glyma07g33300.1 I 0.792
ppa005661m Prunus persica ppa005661m I 0.792
B9N4W3_POPTR Populus trichocarpa POPTR_0004s15080 I 0.787
PK15272.1 Cannabis sativa PK15272.1 I 0.787
XM_002891318.1 Arabidopsis lyrata fgenesh2_kg.1__3846__AT1G47500.1 N 0.786
29801.m003218 Ricinus communis 29801.m003218 I 0.783
Glyma02g15190.1 Glycine max Glyma02g15190.1 I 0.783
cassava1152.valid.m1 Manihot esculenta cassava1152.valid.m1 I 0.778
ATRBP47C Arabidopsis thaliana AT1G47490-TAIR-G N 0.776
Sb02g026820 Sorghum bicolor Sb02g026820 I 0.773
chr4.CM0079.170.nc Lotus japonicus chr4.CM0079.170.nc I 0.773
B9HRX8_POPTR Populus trichocarpa POPTR_0009s10820 I 0.768
GRMZM2G467907 Zea mays GRMZM2G467907 I 0.763
LOC_Os09g28810 Oryza sativa LOC_Os09g28810 I 0.763
GRMZM2G168163 Zea mays GRMZM2G168163 I 0.758
Medtr4g129250 Medicago truncatula Medtr4g129250 I 0.758
BRADI4G32380 Brachypodium distachyon BRADI4G32380 N 0.758
ATRBP47B Arabidopsis thaliana AT3G19130-TAIR-G I 0.758
XM_002885248.1 Arabidopsis lyrata fgenesh2_kg.3__2129__AT3G19130.1 I 0.758
mgf011075m Mimulus guttatus mgf011075m I 0.754
XM_002894151.1 Arabidopsis lyrata fgenesh2_kg.1__4049__AT1G49600.1 I 0.754
gw1.339.2.1 Physcomitrella patens gw1.339.2.1 I 0.754
gw1.219.6.1 Physcomitrella patens gw1.219.6.1 I 0.754
ATRBP47A Arabidopsis thaliana AT1G49600-TAIR-G I 0.749
estExt_Genewise1.C_3910068 Physcomitrella patens estExt_Genewise1.C_3910068 I 0.744
mgf000380m Mimulus guttatus mgf000380m I 0.739
SB06G018280 Sorghum bicolor Sb06g018280 N 0.715
Glyma17g01800.1 Glycine max Glyma17g01800.1 I 0.715
XM_002863704.1 Arabidopsis lyrata fgenesh1_pm.C_scaffold_8000474 N 0.713
Glyma13g27570.1 Glycine max Glyma13g27570.1 I 0.710
Glyma07g38940.1 Glycine max Glyma07g38940.1 I 0.710
cassava37003.valid.m1 Manihot esculenta cassava37003.valid.m1 I 0.707
cassava36999.valid.m1 Manihot esculenta cassava36999.valid.m1 I 0.707
cassava37000.valid.m1 Manihot esculenta cassava37000.valid.m1 I 0.707
cassava37001.valid.m1 Manihot esculenta cassava37001.valid.m1 I 0.707
cassava37002.valid.m1 Manihot esculenta cassava37002.valid.m1 I 0.707
Glyma15g11380.1 Glycine max Glyma15g11380.1 I 0.705
30169.m006434 Ricinus communis 30169.m006434 I 0.702
Cucsa.085910 Cucumis sativus Cucsa.085910 I 0.700