CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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ppa005903m
(
Prunus persica
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
ppa005903m
T58365_0.6
Superfamily (2011-Oct-26)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
gw1.219.6.1_CONSTRUCT
M199_0.6
RNAcompete CONSTRUCTS
UGUUUUD
RNAcompete
Ray et al.(2013)
RNCMPT00229
0.754
For this family, RBPs with RBD identity >
0.7
will likely have a similar motif
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ppa005903m
RRM
102
171
IWVGDLHHWMDENYLHTCFASTGEIASIKVIRNKQTLLSEGYGFVEFFSHATAEKVLQTYTGILMPNTEQ
ppa005903m
RRM
195
266
IFVGDLAADVTDSLLHETFSSKYPSVKAAKVVFDANTGRSKGYGFVRFGDENERSQAMTEMNGVYCSSRPMR
ppa005903m
RRM
309
373
IFVGGLDPNVTDEDLRHPFSQYGEIVSVKIPVGKGCGFVQFANRNNAEEALPKLNGTVIGKQTVR
Links
Other
RRM
family RBPs
Other
Prunus persica
RBPs
60 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
MDP0000136330
Malus x domestica
MDP0000136330
I
0.966
MDP0000200455
Malus x domestica
MDP0000200455
I
0.966
B9MVK8_POPTR
Populus trichocarpa
POPTR_0014s03390
I
0.918
Glyma14g08840.1
Glycine max
Glyma14g08840.1
I
0.918
Glyma17g36330.1
Glycine max
Glyma17g36330.1
I
0.918
cassava35506.valid.m1
Manihot esculenta
cassava35506.valid.m1
I
0.918
PK00840.1
Cannabis sativa
PK00840.1
I
0.913
B9GNX9_POPTR
Populus trichocarpa
POPTR_0002s12960
I
0.913
30170.m014217
Ricinus communis
30170.m014217
I
0.913
chr5.CM0089.1140.nc
Lotus japonicus
chr5.CM0089.1140.nc
I
0.913
MDP0000176892
Malus x domestica
MDP0000176892
N
0.909
Glyma04g03950.1
Glycine max
Glyma04g03950.1
I
0.903
Cucsa.123510
Cucumis sativus
Cucsa.123510
I
0.885
Cucsa.232650
Cucumis sativus
Cucsa.232650
I
0.874
Medtr3g148180
Medicago truncatula
Medtr3g148180
I
0.865
GSVIVG00009558001
Vitis vinifera
GSVIVG00009558001
I
0.860
Glyma06g04100.1
Glycine max
Glyma06g04100.1
I
0.853
GSVIVG00031780001
Vitis vinifera
GSVIVG00031780001
I
0.812
mgf012795m
Mimulus guttatus
mgf012795m
I
0.807
mgf013285m
Mimulus guttatus
mgf013285m
N
0.797
Glyma07g33300.1
Glycine max
Glyma07g33300.1
I
0.792
ppa005661m
Prunus persica
ppa005661m
I
0.792
B9N4W3_POPTR
Populus trichocarpa
POPTR_0004s15080
I
0.787
PK15272.1
Cannabis sativa
PK15272.1
I
0.787
XM_002891318.1
Arabidopsis lyrata
fgenesh2_kg.1__3846__AT1G47500.1
N
0.786
29801.m003218
Ricinus communis
29801.m003218
I
0.783
Glyma02g15190.1
Glycine max
Glyma02g15190.1
I
0.783
cassava1152.valid.m1
Manihot esculenta
cassava1152.valid.m1
I
0.778
ATRBP47C
Arabidopsis thaliana
AT1G47490-TAIR-G
N
0.776
Sb02g026820
Sorghum bicolor
Sb02g026820
I
0.773
chr4.CM0079.170.nc
Lotus japonicus
chr4.CM0079.170.nc
I
0.773
B9HRX8_POPTR
Populus trichocarpa
POPTR_0009s10820
I
0.768
GRMZM2G467907
Zea mays
GRMZM2G467907
I
0.763
LOC_Os09g28810
Oryza sativa
LOC_Os09g28810
I
0.763
GRMZM2G168163
Zea mays
GRMZM2G168163
I
0.758
Medtr4g129250
Medicago truncatula
Medtr4g129250
I
0.758
BRADI4G32380
Brachypodium distachyon
BRADI4G32380
N
0.758
ATRBP47B
Arabidopsis thaliana
AT3G19130-TAIR-G
I
0.758
XM_002885248.1
Arabidopsis lyrata
fgenesh2_kg.3__2129__AT3G19130.1
I
0.758
mgf011075m
Mimulus guttatus
mgf011075m
I
0.754
XM_002894151.1
Arabidopsis lyrata
fgenesh2_kg.1__4049__AT1G49600.1
I
0.754
gw1.339.2.1
Physcomitrella patens
gw1.339.2.1
I
0.754
gw1.219.6.1
Physcomitrella patens
gw1.219.6.1
I
0.754
ATRBP47A
Arabidopsis thaliana
AT1G49600-TAIR-G
I
0.749
estExt_Genewise1.C_3910068
Physcomitrella patens
estExt_Genewise1.C_3910068
I
0.744
mgf000380m
Mimulus guttatus
mgf000380m
I
0.739
SB06G018280
Sorghum bicolor
Sb06g018280
N
0.715
Glyma17g01800.1
Glycine max
Glyma17g01800.1
I
0.715
XM_002863704.1
Arabidopsis lyrata
fgenesh1_pm.C_scaffold_8000474
N
0.713
Glyma13g27570.1
Glycine max
Glyma13g27570.1
I
0.710
Glyma07g38940.1
Glycine max
Glyma07g38940.1
I
0.710
cassava37003.valid.m1
Manihot esculenta
cassava37003.valid.m1
I
0.707
cassava36999.valid.m1
Manihot esculenta
cassava36999.valid.m1
I
0.707
cassava37000.valid.m1
Manihot esculenta
cassava37000.valid.m1
I
0.707
cassava37001.valid.m1
Manihot esculenta
cassava37001.valid.m1
I
0.707
cassava37002.valid.m1
Manihot esculenta
cassava37002.valid.m1
I
0.707
Glyma15g11380.1
Glycine max
Glyma15g11380.1
I
0.705
30169.m006434
Ricinus communis
30169.m006434
I
0.702
Cucsa.085910
Cucumis sativus
Cucsa.085910
I
0.700