30170.m014217 (Ricinus communis)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 30170.m014217 T48786_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
gw1.219.6.1_CONSTRUCT
M199_0.6 		RNAcompete CONSTRUCTS UGUUUUD RNAcompete
Ray et al.(2013)
RNCMPT00229 		0.744
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
30170.m014217 RRM 111 180
30170.m014217 RRM 204 275
30170.m014217 RRM 314 378

Links

Other RRM family RBPs
Other Ricinus communis RBPs

55 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
B9MVK8_POPTR Populus trichocarpa POPTR_0014s03390 I 0.942
cassava35506.valid.m1 Manihot esculenta cassava35506.valid.m1 I 0.937
Glyma17g36330.1 Glycine max Glyma17g36330.1 I 0.932
Glyma14g08840.1 Glycine max Glyma14g08840.1 I 0.932
Glyma04g03950.1 Glycine max Glyma04g03950.1 I 0.923
B9GNX9_POPTR Populus trichocarpa POPTR_0002s12960 I 0.923
chr5.CM0089.1140.nc Lotus japonicus chr5.CM0089.1140.nc I 0.918
ppa005903m Prunus persica ppa005903m I 0.913
MDP0000200455 Malus x domestica MDP0000200455 I 0.908
MDP0000136330 Malus x domestica MDP0000136330 I 0.908
PK00840.1 Cannabis sativa PK00840.1 I 0.894
Glyma06g04100.1 Glycine max Glyma06g04100.1 I 0.882
Cucsa.232650 Cucumis sativus Cucsa.232650 I 0.865
Cucsa.123510 Cucumis sativus Cucsa.123510 I 0.861
MDP0000176892 Malus x domestica MDP0000176892 N 0.854
Medtr3g148180 Medicago truncatula Medtr3g148180 I 0.845
GSVIVG00009558001 Vitis vinifera GSVIVG00009558001 I 0.831
Glyma07g33300.1 Glycine max Glyma07g33300.1 I 0.812
Glyma02g15190.1 Glycine max Glyma02g15190.1 I 0.807
GSVIVG00031780001 Vitis vinifera GSVIVG00031780001 I 0.787
chr4.CM0079.170.nc Lotus japonicus chr4.CM0079.170.nc I 0.783
Sb02g026820 Sorghum bicolor Sb02g026820 I 0.783
mgf012795m Mimulus guttatus mgf012795m I 0.783
GRMZM2G467907 Zea mays GRMZM2G467907 I 0.783
mgf013285m Mimulus guttatus mgf013285m N 0.778
PK15272.1 Cannabis sativa PK15272.1 I 0.778
LOC_Os09g28810 Oryza sativa LOC_Os09g28810 I 0.778
B9N4W3_POPTR Populus trichocarpa POPTR_0004s15080 I 0.773
BRADI4G32380 Brachypodium distachyon BRADI4G32380 N 0.773
XM_002891318.1 Arabidopsis lyrata fgenesh2_kg.1__3846__AT1G47500.1 N 0.771
ATRBP47C Arabidopsis thaliana AT1G47490-TAIR-G N 0.771
GRMZM2G168163 Zea mays GRMZM2G168163 I 0.768
B9HRX8_POPTR Populus trichocarpa POPTR_0009s10820 I 0.763
29801.m003218 Ricinus communis 29801.m003218 I 0.763
ppa005661m Prunus persica ppa005661m I 0.763
cassava1152.valid.m1 Manihot esculenta cassava1152.valid.m1 I 0.763
Medtr4g129250 Medicago truncatula Medtr4g129250 I 0.763
XM_002885248.1 Arabidopsis lyrata fgenesh2_kg.3__2129__AT3G19130.1 I 0.749
mgf011075m Mimulus guttatus mgf011075m I 0.749
ATRBP47B Arabidopsis thaliana AT3G19130-TAIR-G I 0.744
gw1.339.2.1 Physcomitrella patens gw1.339.2.1 I 0.744
gw1.219.6.1 Physcomitrella patens gw1.219.6.1 I 0.744
XM_002894151.1 Arabidopsis lyrata fgenesh2_kg.1__4049__AT1G49600.1 I 0.739
estExt_Genewise1.C_3910068 Physcomitrella patens estExt_Genewise1.C_3910068 I 0.734
ATRBP47A Arabidopsis thaliana AT1G49600-TAIR-G I 0.734
mgf000380m Mimulus guttatus mgf000380m I 0.720
mgf010468m Mimulus guttatus mgf010468m I 0.712
Glyma13g27570.1 Glycine max Glyma13g27570.1 I 0.705
Glyma17g01800.1 Glycine max Glyma17g01800.1 I 0.705
fgenesh1_pm.C_scaffold_35000004 Selaginella moellendorfii fgenesh1_pm.C_scaffold_35000004 I 0.702
Glyma15g11380.1 Glycine max Glyma15g11380.1 I 0.700
Glyma07g38940.1 Glycine max Glyma07g38940.1 I 0.700
Cucsa.085910 Cucumis sativus Cucsa.085910 I 0.700
Cucsa.085920 Cucumis sativus Cucsa.085920 I 0.700