Cucsa.123510 (Cucumis sativus)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 Cucsa.123510 T49563_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
gw1.219.6.1_CONSTRUCT
M199_0.6 		RNAcompete CONSTRUCTS UGUUUUD RNAcompete
Ray et al.(2013)
RNCMPT00229 		0.716
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
Cucsa.123510.1 RRM 86 156
Cucsa.123510.1 RRM 179 250
Cucsa.123510.1 RRM 294 358

Links

Other RRM family RBPs
Other Cucumis sativus RBPs

50 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
MDP0000200455 Malus x domestica MDP0000200455 I 0.885
B9MVK8_POPTR Populus trichocarpa POPTR_0014s03390 I 0.885
MDP0000136330 Malus x domestica MDP0000136330 I 0.885
ppa005903m Prunus persica ppa005903m I 0.885
chr5.CM0089.1140.nc Lotus japonicus chr5.CM0089.1140.nc I 0.880
Glyma14g08840.1 Glycine max Glyma14g08840.1 I 0.875
Glyma17g36330.1 Glycine max Glyma17g36330.1 I 0.875
PK00840.1 Cannabis sativa PK00840.1 I 0.870
Glyma04g03950.1 Glycine max Glyma04g03950.1 I 0.865
Cucsa.232650 Cucumis sativus Cucsa.232650 I 0.865
30170.m014217 Ricinus communis 30170.m014217 I 0.861
B9GNX9_POPTR Populus trichocarpa POPTR_0002s12960 I 0.856
cassava35506.valid.m1 Manihot esculenta cassava35506.valid.m1 I 0.851
MDP0000176892 Malus x domestica MDP0000176892 N 0.827
Medtr3g148180 Medicago truncatula Medtr3g148180 I 0.822
Glyma06g04100.1 Glycine max Glyma06g04100.1 I 0.821
GSVIVG00009558001 Vitis vinifera GSVIVG00009558001 I 0.812
mgf013285m Mimulus guttatus mgf013285m N 0.803
mgf012795m Mimulus guttatus mgf012795m I 0.803
cassava1152.valid.m1 Manihot esculenta cassava1152.valid.m1 I 0.784
B9N4W3_POPTR Populus trichocarpa POPTR_0004s15080 I 0.784
GSVIVG00031780001 Vitis vinifera GSVIVG00031780001 I 0.779
29801.m003218 Ricinus communis 29801.m003218 I 0.779
PK15272.1 Cannabis sativa PK15272.1 I 0.779
ppa005661m Prunus persica ppa005661m I 0.774
XM_002891318.1 Arabidopsis lyrata fgenesh2_kg.1__3846__AT1G47500.1 N 0.773
Sb02g026820 Sorghum bicolor Sb02g026820 I 0.760
ATRBP47B Arabidopsis thaliana AT3G19130-TAIR-G I 0.760
B9HRX8_POPTR Populus trichocarpa POPTR_0009s10820 I 0.760
Glyma07g33300.1 Glycine max Glyma07g33300.1 I 0.760
Glyma02g15190.1 Glycine max Glyma02g15190.1 I 0.760
XM_002885248.1 Arabidopsis lyrata fgenesh2_kg.3__2129__AT3G19130.1 I 0.755
chr4.CM0079.170.nc Lotus japonicus chr4.CM0079.170.nc I 0.750
GRMZM2G467907 Zea mays GRMZM2G467907 I 0.750
XM_002894151.1 Arabidopsis lyrata fgenesh2_kg.1__4049__AT1G49600.1 I 0.750
ATRBP47C Arabidopsis thaliana AT1G47490-TAIR-G N 0.749
ATRBP47A Arabidopsis thaliana AT1G49600-TAIR-G I 0.745
LOC_Os09g28810 Oryza sativa LOC_Os09g28810 I 0.745
GRMZM2G168163 Zea mays GRMZM2G168163 I 0.740
Medtr4g129250 Medicago truncatula Medtr4g129250 I 0.740
BRADI4G32380 Brachypodium distachyon BRADI4G32380 N 0.740
mgf011075m Mimulus guttatus mgf011075m I 0.726
mgf000380m Mimulus guttatus mgf000380m I 0.721
estExt_Genewise1.C_3910068 Physcomitrella patens estExt_Genewise1.C_3910068 I 0.721
gw1.339.2.1 Physcomitrella patens gw1.339.2.1 I 0.716
gw1.219.6.1 Physcomitrella patens gw1.219.6.1 I 0.716
XM_002863704.1 Arabidopsis lyrata fgenesh1_pm.C_scaffold_8000474 N 0.714
SB06G018280 Sorghum bicolor Sb06g018280 N 0.707
LOC_Os04g37690 Oryza sativa LOC_Os04g37690 N 0.702