B9MVK8_POPTR (Populus trichocarpa)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 POPTR_0014s03390 T45646_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
gw1.219.6.1_CONSTRUCT
M199_0.6 		RNAcompete CONSTRUCTS UGUUUUD RNAcompete
Ray et al.(2013)
RNCMPT00229 		0.749
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
POPTR_0014s03390.1 RRM 95 164
POPTR_0014s03390.1 RRM 188 259
POPTR_0014s03390.1 RRM 298 362

Links

Other RRM family RBPs
Other Populus trichocarpa RBPs

62 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
B9GNX9_POPTR Populus trichocarpa POPTR_0002s12960 I 0.947
30170.m014217 Ricinus communis 30170.m014217 I 0.942
cassava35506.valid.m1 Manihot esculenta cassava35506.valid.m1 I 0.937
Glyma17g36330.1 Glycine max Glyma17g36330.1 I 0.923
Glyma14g08840.1 Glycine max Glyma14g08840.1 I 0.923
ppa005903m Prunus persica ppa005903m I 0.918
MDP0000200455 Malus x domestica MDP0000200455 I 0.913
MDP0000136330 Malus x domestica MDP0000136330 I 0.913
PK00840.1 Cannabis sativa PK00840.1 I 0.909
chr5.CM0089.1140.nc Lotus japonicus chr5.CM0089.1140.nc I 0.899
Glyma04g03950.1 Glycine max Glyma04g03950.1 I 0.899
Cucsa.123510 Cucumis sativus Cucsa.123510 I 0.885
Cucsa.232650 Cucumis sativus Cucsa.232650 I 0.874
MDP0000176892 Malus x domestica MDP0000176892 N 0.854
Glyma06g04100.1 Glycine max Glyma06g04100.1 I 0.853
Medtr3g148180 Medicago truncatula Medtr3g148180 I 0.841
GSVIVG00009558001 Vitis vinifera GSVIVG00009558001 I 0.836
mgf012795m Mimulus guttatus mgf012795m I 0.802
mgf013285m Mimulus guttatus mgf013285m N 0.792
Glyma07g33300.1 Glycine max Glyma07g33300.1 I 0.792
GSVIVG00031780001 Vitis vinifera GSVIVG00031780001 I 0.787
Glyma02g15190.1 Glycine max Glyma02g15190.1 I 0.787
B9N4W3_POPTR Populus trichocarpa POPTR_0004s15080 I 0.787
Sb02g026820 Sorghum bicolor Sb02g026820 I 0.787
Medtr4g129250 Medicago truncatula Medtr4g129250 I 0.783
cassava1152.valid.m1 Manihot esculenta cassava1152.valid.m1 I 0.778
PK15272.1 Cannabis sativa PK15272.1 I 0.778
GRMZM2G467907 Zea mays GRMZM2G467907 I 0.778
29801.m003218 Ricinus communis 29801.m003218 I 0.778
chr4.CM0079.170.nc Lotus japonicus chr4.CM0079.170.nc I 0.773
BRADI4G32380 Brachypodium distachyon BRADI4G32380 N 0.773
B9HRX8_POPTR Populus trichocarpa POPTR_0009s10820 I 0.768
GRMZM2G168163 Zea mays GRMZM2G168163 I 0.768
ppa005661m Prunus persica ppa005661m I 0.768
LOC_Os09g28810 Oryza sativa LOC_Os09g28810 I 0.768
ATRBP47C Arabidopsis thaliana AT1G47490-TAIR-G N 0.767
XM_002891318.1 Arabidopsis lyrata fgenesh2_kg.1__3846__AT1G47500.1 N 0.767
gw1.219.6.1 Physcomitrella patens gw1.219.6.1 I 0.749
gw1.339.2.1 Physcomitrella patens gw1.339.2.1 I 0.749
XM_002885248.1 Arabidopsis lyrata fgenesh2_kg.3__2129__AT3G19130.1 I 0.744
mgf011075m Mimulus guttatus mgf011075m I 0.744
ATRBP47B Arabidopsis thaliana AT3G19130-TAIR-G I 0.739
estExt_Genewise1.C_3910068 Physcomitrella patens estExt_Genewise1.C_3910068 I 0.739
XM_002894151.1 Arabidopsis lyrata fgenesh2_kg.1__4049__AT1G49600.1 I 0.734
ATRBP47A Arabidopsis thaliana AT1G49600-TAIR-G I 0.729
mgf000380m Mimulus guttatus mgf000380m I 0.715
XM_002863704.1 Arabidopsis lyrata fgenesh1_pm.C_scaffold_8000474 N 0.713
Cucsa.085910 Cucumis sativus Cucsa.085910 I 0.710
GSVIVG00025280001 Vitis vinifera GSVIVG00025280001 I 0.707
mgf010468m Mimulus guttatus mgf010468m I 0.707
Cucsa.085920 Cucumis sativus Cucsa.085920 I 0.705
Glyma17g01800.1 Glycine max Glyma17g01800.1 I 0.705
cassava37001.valid.m1 Manihot esculenta cassava37001.valid.m1 I 0.702
cassava37000.valid.m1 Manihot esculenta cassava37000.valid.m1 I 0.702
cassava36999.valid.m1 Manihot esculenta cassava36999.valid.m1 I 0.702
cassava37002.valid.m1 Manihot esculenta cassava37002.valid.m1 I 0.702
cassava37003.valid.m1 Manihot esculenta cassava37003.valid.m1 I 0.702
SB06G018280 Sorghum bicolor Sb06g018280 N 0.700
SB01G016170 Sorghum bicolor Sb01g016170 N 0.700
Glyma07g38940.1 Glycine max Glyma07g38940.1 I 0.700
Glyma13g27570.1 Glycine max Glyma13g27570.1 I 0.700