BRADI1G63570 (Brachypodium distachyon)
CCCH ZF,RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00642 (zf-CCCH)
PF00076 (RRM_1) 		IPR000571
IPR000504 		BRADI1G63570 T00401_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
BRADI1G63570.1 CCCH ZF 228 250
BRADI1G63570.1 RRM 365 424

Links

Other CCCH ZF,RRM family RBPs
Other Brachypodium distachyon RBPs

67 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
LOC_Os03g21140 Oryza sativa LOC_Os03g21140 N 0.928
BGIOSIBCE010969 Oryza indica BGIOSIBCE010969 N 0.928
GRMZM2G086614 Zea mays GRMZM2G086614 N 0.904
GRMZM2G003424 Zea mays GRMZM2G003424 N 0.904
BGIOSIBCE010970 Oryza indica BGIOSIBCE010970 N 0.904
SB01G036490 Sorghum bicolor Sb01g036490 N 0.904
LOC_Os03g21160 Oryza sativa LOC_Os03g21160 N 0.904
LOC_Os07g48410 Oryza sativa LOC_Os07g48410 N 0.892
GRMZM2G311665 Zea mays GRMZM2G311665 N 0.892
SB02G043180 Sorghum bicolor Sb02g043180 N 0.892
BGIOSIBCE026070 Oryza indica BGIOSIBCE026070 N 0.892
BRADI1G17510 Brachypodium distachyon BRADI1G17510 N 0.880
BRADI4G44040 Brachypodium distachyon BRADI4G44040 N 0.880
GRMZM2G368883 Zea mays GRMZM2G368883 N 0.869
B9GI27_POPTR Populus trichocarpa POPTR_0001s26250 N 0.855
Cucsa.166080 Cucumis sativus Cucsa.166080 N 0.855
cassava30652.valid.m1 Manihot esculenta cassava30652.valid.m1 N 0.845
cassava30651.valid.m1 Manihot esculenta cassava30651.valid.m1 N 0.845
MDP0000243086 Malus x domestica MDP0000243086 N 0.843
ppa023263m Prunus persica ppa023263m N 0.843
30169.m006471 Ricinus communis 30169.m006471 N 0.833
Glyma09g35990.1 Glycine max Glyma09g35990.1 N 0.831
Glyma09g35980.1 Glycine max Glyma09g35980.1 N 0.831
LjT28K11.10.nd Lotus japonicus LjT28K11.10.nd N 0.831
MDP0000220601 Malus x domestica MDP0000220601 N 0.831
mgf014647m Mimulus guttatus mgf014647m N 0.831
Glyma12g01350.1 Glycine max Glyma12g01350.1 N 0.831
Glyma12g01340.1 Glycine max Glyma12g01340.1 N 0.831
cassava7294.valid.m1 Manihot esculenta cassava7294.valid.m1 N 0.831
cassava7292.valid.m1 Manihot esculenta cassava7292.valid.m1 N 0.831
B9GWA9_POPTR Populus trichocarpa POPTR_0003s20310 N 0.831
GSVIVG00001467001 Vitis vinifera GSVIVG00001467001 N 0.831
cassava7293.valid.m1 Manihot esculenta cassava7293.valid.m1 N 0.831
cassava9561.m1 Manihot esculenta cassava9561.m1 N 0.831
B9HNZ4_POPTR Populus trichocarpa POPTR_0009s05520 N 0.821
MDP0000120462 Malus x domestica MDP0000120462 N 0.821
POPTR_0001s05760 Populus trichocarpa POPTR_0001s05760 N 0.819
SB08G001980 Sorghum bicolor Sb08g001980 N 0.819
GRMZM2G044004 Zea mays GRMZM2G044004 N 0.819
cassava2158.valid.m1 Manihot esculenta cassava2158.valid.m1 N 0.816
MDP0000120231 Malus x domestica MDP0000120231 N 0.810
ppa002413m Prunus persica ppa002413m N 0.810
Medtr4g118330 Medicago truncatula Medtr4g118330 N 0.807
GRMZM2G346113 Zea mays GRMZM2G346113 N 0.807
MDP0000256775 Malus x domestica MDP0000256775 N 0.807
MDP0000259773 Malus x domestica MDP0000259773 N 0.807
ppa002383m Prunus persica ppa002383m N 0.802
GSVIVG00031538001 Vitis vinifera GSVIVG00031538001 N 0.798
SB05G001540 Sorghum bicolor Sb05g001540 N 0.795
MDP0000164538 Malus x domestica MDP0000164538 N 0.791
chr2.CM0018.150.nc Lotus japonicus chr2.CM0018.150.nc N 0.791
PK18074.1 Cannabis sativa PK18074.1 N 0.779
Glyma11g01780.1 Glycine max Glyma11g01780.1 N 0.770
Medtr5g008940 Medicago truncatula Medtr5g008940 N 0.770
Glyma01g43700.1 Glycine max Glyma01g43700.1 N 0.770
Cucsa.333940 Cucumis sativus Cucsa.333940 N 0.767
AT3G51950 Arabidopsis thaliana AT3G51950-TAIR-G N 0.759
XM_002877790.1 Arabidopsis lyrata fgenesh2_kg.5__1545__AT3G51950.1 N 0.759
e_gw1.136.54.1 Physcomitrella patens e_gw1.136.54.1 N 0.750
GRMZM2G132749 Zea mays GRMZM2G132749 N 0.747
mgf002273m Mimulus guttatus mgf002273m N 0.741
XM_002313318.1 Populus trichocarpa POPTR_0009s05510 N 0.736
cassava2159.valid.m1 Manihot esculenta cassava2159.valid.m1 N 0.733
B9GI28_POPTR Populus trichocarpa POPTR_0001s26240 N 0.721
30169.m006472 Ricinus communis 30169.m006472 N 0.721
mgf000973m Mimulus guttatus mgf000973m N 0.718
e_gw1.31.137.1 Physcomitrella patens e_gw1.31.137.1 N 0.714