GRMZM2G086614 (Zea mays)
CCCH ZF,RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00642 (zf-CCCH)
PF00076 (RRM_1) 		IPR000571
IPR000504 		GRMZM2G086614 T01008_0.6 MaizeSequence (2009-Oct-16)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
GRMZM2G086614_P01 CCCH ZF 234 255
GRMZM2G086614_P01 RRM 377 436
GRMZM2G086614_P02 CCCH ZF 234 255
GRMZM2G086614_P02 RRM 377 436

Links

Other CCCH ZF,RRM family RBPs
Other Zea mays RBPs

71 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
SB01G036490 Sorghum bicolor Sb01g036490 N 1.000
GRMZM2G003424 Zea mays GRMZM2G003424 N 1.000
BGIOSIBCE010969 Oryza indica BGIOSIBCE010969 N 0.976
LOC_Os03g21140 Oryza sativa LOC_Os03g21140 N 0.976
LOC_Os03g21160 Oryza sativa LOC_Os03g21160 N 0.976
BGIOSIBCE010970 Oryza indica BGIOSIBCE010970 N 0.976
GRMZM2G368883 Zea mays GRMZM2G368883 N 0.964
SB02G043180 Sorghum bicolor Sb02g043180 N 0.963
BGIOSIBCE026070 Oryza indica BGIOSIBCE026070 N 0.963
LOC_Os07g48410 Oryza sativa LOC_Os07g48410 N 0.963
GRMZM2G311665 Zea mays GRMZM2G311665 N 0.963
ppa023263m Prunus persica ppa023263m N 0.927
BRADI1G17510 Brachypodium distachyon BRADI1G17510 N 0.927
30169.m006471 Ricinus communis 30169.m006471 N 0.916
Glyma12g01340.1 Glycine max Glyma12g01340.1 N 0.915
Glyma09g35980.1 Glycine max Glyma09g35980.1 N 0.915
Glyma09g35990.1 Glycine max Glyma09g35990.1 N 0.915
Glyma12g01350.1 Glycine max Glyma12g01350.1 N 0.915
GSVIVG00001467001 Vitis vinifera GSVIVG00001467001 N 0.915
MDP0000243086 Malus x domestica MDP0000243086 N 0.915
Cucsa.166080 Cucumis sativus Cucsa.166080 N 0.915
BRADI4G44040 Brachypodium distachyon BRADI4G44040 N 0.915
BRADI1G63570 Brachypodium distachyon BRADI1G63570 N 0.904
B9GWA9_POPTR Populus trichocarpa POPTR_0003s20310 N 0.902
cassava30652.valid.m1 Manihot esculenta cassava30652.valid.m1 N 0.893
cassava30651.valid.m1 Manihot esculenta cassava30651.valid.m1 N 0.893
LjT28K11.10.nd Lotus japonicus LjT28K11.10.nd N 0.892
POPTR_0001s05760 Populus trichocarpa POPTR_0001s05760 N 0.890
GSVIVG00031538001 Vitis vinifera GSVIVG00031538001 N 0.880
MDP0000120231 Malus x domestica MDP0000120231 N 0.880
ppa002413m Prunus persica ppa002413m N 0.880
cassava9561.m1 Manihot esculenta cassava9561.m1 N 0.878
cassava7294.valid.m1 Manihot esculenta cassava7294.valid.m1 N 0.878
cassava7292.valid.m1 Manihot esculenta cassava7292.valid.m1 N 0.878
cassava7293.valid.m1 Manihot esculenta cassava7293.valid.m1 N 0.878
MDP0000220601 Malus x domestica MDP0000220601 N 0.867
B9GI27_POPTR Populus trichocarpa POPTR_0001s26250 N 0.867
MDP0000120462 Malus x domestica MDP0000120462 N 0.867
mgf014647m Mimulus guttatus mgf014647m N 0.867
cassava2158.valid.m1 Manihot esculenta cassava2158.valid.m1 N 0.862
B9HNZ4_POPTR Populus trichocarpa POPTR_0009s05520 N 0.845
MDP0000256775 Malus x domestica MDP0000256775 N 0.843
MDP0000259773 Malus x domestica MDP0000259773 N 0.843
SB08G001980 Sorghum bicolor Sb08g001980 N 0.831
GRMZM2G044004 Zea mays GRMZM2G044004 N 0.831
Medtr4g118330 Medicago truncatula Medtr4g118330 N 0.831
GRMZM2G346113 Zea mays GRMZM2G346113 N 0.819
SB05G001540 Sorghum bicolor Sb05g001540 N 0.807
AT3G51950 Arabidopsis thaliana AT3G51950-TAIR-G N 0.805
XM_002877790.1 Arabidopsis lyrata fgenesh2_kg.5__1545__AT3G51950.1 N 0.805
ppa002383m Prunus persica ppa002383m N 0.800
Cucsa.333940 Cucumis sativus Cucsa.333940 N 0.791
cassava2159.valid.m1 Manihot esculenta cassava2159.valid.m1 N 0.788
MDP0000164538 Malus x domestica MDP0000164538 N 0.788
XM_002313318.1 Populus trichocarpa POPTR_0009s05510 N 0.779
chr2.CM0018.150.nc Lotus japonicus chr2.CM0018.150.nc N 0.779
mgf002273m Mimulus guttatus mgf002273m N 0.776
30169.m006472 Ricinus communis 30169.m006472 N 0.776
mgf000973m Mimulus guttatus mgf000973m N 0.774
Medtr5g008940 Medicago truncatula Medtr5g008940 N 0.770
Glyma11g01780.1 Glycine max Glyma11g01780.1 N 0.770
Glyma01g43700.1 Glycine max Glyma01g43700.1 N 0.770
B9GI28_POPTR Populus trichocarpa POPTR_0001s26240 N 0.767
PK18074.1 Cannabis sativa PK18074.1 N 0.765
e_gw1.136.54.1 Physcomitrella patens e_gw1.136.54.1 N 0.750
cassava34046.m1 Manihot esculenta cassava34046.m1 N 0.747
GRMZM2G132749 Zea mays GRMZM2G132749 N 0.735
e_gw1.31.137.1 Physcomitrella patens e_gw1.31.137.1 N 0.723
XM_002873527.1 Arabidopsis lyrata fgenesh1_pm.C_scaffold_6000986 N 0.723
AT5G12440 Arabidopsis thaliana AT5G12440-TAIR-G N 0.723