AAA60936 (Xenopus laevis)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 AAA60936 T59424_0.6 Xenbase (2010-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
PABPC1
M146_0.6 		Homo sapiens ARAAAAM RNAcompete
Ray et al.(2013)
RNCMPT00155 		0.939
PABPC1
M349_0.6 		Homo sapiens ACDAAYM SELEX
Cook et al.(2011)
950_7908267 		0.939
PABPC1
M275_0.6 		Homo sapiens AAAAA SELEX
Cook et al.(2011)
24_7908267 		0.939
PABPC3
M144_0.6 		Homo sapiens RAAAACM RNAcompete
Ray et al.(2013)
RNCMPT00153 		0.878
PABPC4
M042_0.6 		Homo sapiens AAAAAAR RNAcompete
Ray et al.(2013)
RNCMPT00043 		0.853
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
AAA60936 RRM 13 83
AAA60936 RRM 101 169
AAA60936 RRM 193 262
AAA60936 RRM 296 364

Links

Other RRM family RBPs
Other Xenopus laevis RBPs

171 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
AAH52100 Xenopus laevis AAH52100 I 0.996
P20965 Xenopus laevis P20965 I 0.996
CAA40721 Xenopus laevis CAA40721 I 0.996
pabpc1 Xenopus tropicalis ENSXETG00000006635 I 0.964
Q6IP09 Xenopus laevis Q6IP09 I 0.943
Pabpc1 Mus musculus ENSMUSG00000022283 I 0.943
PABPC1 Taeniopygia guttata ENSTGUG00000012067 I 0.943
Pabpc1 Rattus norvegicus ENSRNOG00000008639 I 0.943
ENSOANG00000007307 Ornithorhynchus anatinus ENSOANG00000007307 I 0.943
AAH72110 Xenopus laevis AAH72110 I 0.943
ENSACAG00000016470 Anolis carolinensis ENSACAG00000016470 I 0.943
AAI08463 Xenopus laevis AAI08463 I 0.943
ENSCAFG00000000567 Canis familiaris ENSCAFG00000000567 I 0.939
ENSPPYG00000018790 Pongo pygmaeus ENSPPYG00000018790 I 0.939
ENSSSCG00000006063 Sus scrofa ENSSSCG00000006063 I 0.939
PABPC1 Macaca mulatta ENSMMUG00000017786 I 0.939
ENSOCUG00000023935 Oryctolagus cuniculus ENSOCUG00000023935 I 0.939
ENSTTRG00000004689 Tursiops truncatus ENSTTRG00000004689 I 0.939
ENSOCUG00000004354 Oryctolagus cuniculus ENSOCUG00000004354 I 0.939
LOC100413032 Callithrix jacchus ENSCJAG00000015833 I 0.939
ENSOPRG00000009667 Ochotona princeps ENSOPRG00000009667 I 0.939
ENSLAFG00000013994 Loxodonta africana ENSLAFG00000013994 I 0.939
ENSPVAG00000016640 Pteropus vampyrus ENSPVAG00000016640 I 0.939
PABPC1 Homo sapiens ENSG00000070756 D 0.939
XR_030308.1 Monodelphis domestica ENSMODG00000006222 I 0.936
XR_023909.1 Pan troglodytes ENSPTRG00000020475 I 0.935
pabpc1a Danio rerio ENSDARG00000017219 I 0.928
PABPC3 Oryzias latipes ENSORLG00000002691 I 0.925
PABPC3 Takifugu rubripes ENSTRUG00000011577 I 0.921
ENSTRUG00000003767 Takifugu rubripes ENSTRUG00000003767 I 0.918
ENSTNIG00000009153 Tetraodon nigroviridis ENSTNIG00000009153 I 0.918
ENSTSYG00000004229 Tarsius syrichta ENSTSYG00000004229 I 0.918
Ame_R001741 Ailuropoda melanoleuca Ame_R001741 I 0.918
PABPC3 Gasterosteus aculeatus ENSGACG00000003572 I 0.918
pabpc1b Danio rerio ENSDARG00000021140 I 0.914
LOC100411130 Callithrix jacchus ENSCJAG00000018953 I 0.907
ENSGACG00000003771 Gasterosteus aculeatus ENSGACG00000003771 I 0.903
XM_001367383.1 Monodelphis domestica ENSMODG00000017105 I 0.896
ENSORLG00000003008 Oryzias latipes ENSORLG00000003008 I 0.889
ENSPPYG00000005219 Pongo pygmaeus ENSPPYG00000005219 I 0.889
PABPC3 Macaca mulatta ENSMMUG00000020835 I 0.889
AAH73435 Xenopus laevis AAH73435 I 0.885
PABPC3 Tetraodon nigroviridis ENSTNIG00000013307 I 0.884
PABPC4 Gallus gallus ENSGALG00000003800 I 0.882
PABPC4 Taeniopygia guttata ENSTGUG00000001266 I 0.882
Q2VIP2_PANTR Pan troglodytes ENSPTRG00000022593 I 0.878
Pabpc3 Rattus norvegicus ENSRNOG00000017367 I 0.878
PABPC3 Homo sapiens ENSG00000151846 D 0.878
Pabpc6 Mus musculus ENSMUSG00000046173 I 0.875
ENSOANG00000010001 Ornithorhynchus anatinus ENSOANG00000010001 I 0.875
XM_001365232.1 Monodelphis domestica ENSMODG00000017657 I 0.871
Pabpc2 Mus musculus ENSMUSG00000051732 I 0.867
Pabpc2 Rattus norvegicus ENSRNOG00000014527 I 0.867
pabpc4 Danio rerio ENSDARG00000059259 I 0.860
PABPC4 Tetraodon nigroviridis ENSTNIG00000016902 I 0.857
PABPC4 Oryzias latipes ENSORLG00000017479 I 0.857
PABPC4 Gorilla gorilla ENSGGOG00000004002 I 0.853
PABPC4 Gasterosteus aculeatus ENSGACG00000007179 I 0.853
PABPC4 Cavia porcellus ENSCPOG00000009552 I 0.853
PABPC4 Pan troglodytes ENSPTRG00000000573 I 0.853
D4AC21_RAT Rattus norvegicus ENSRNOG00000015642 I 0.853
Q8QGJ7_FUGRU Takifugu rubripes ENSTRUG00000005907 I 0.853
ENSPPYG00000001506 Pongo pygmaeus ENSPPYG00000001506 I 0.853
A6MKJ4_CALJA Callithrix jacchus ENSCJAG00000002512 I 0.853
PABPC4 Homo sapiens ENSG00000090621 D 0.853
PABPC4 Loxodonta africana ENSLAFG00000000151 I 0.849
PABPC4 Canis familiaris ENSCAFG00000003081 I 0.849
A4IFC3_BOVIN Bos taurus ENSBTAG00000017125 I 0.849
ENSMICG00000000431 Microcebus murinus ENSMICG00000000431 I 0.849
PABPC4 Macaca mulatta ENSMMUG00000007497 I 0.849
PABPC4 Sus scrofa ENSSSCG00000003660 I 0.849
LOC100054235 Equus caballus ENSECAG00000009396 I 0.849
PABPC1L Gallus gallus ENSGALG00000004123 I 0.846
PABPC4 Ochotona princeps ENSOPRG00000011984 I 0.846
Gm10110 Mus musculus ENSMUSG00000062093 I 0.846
PABPC4 Oryctolagus cuniculus ENSOCUG00000000562 I 0.846
PABPC1L Meleagris gallopavo ENSMGAG00000003674 I 0.846
Pabpc4 Mus musculus ENSMUSG00000011257 I 0.842
PABPC4 Erinaceus europaeus ENSEEUG00000002962 I 0.842
PABPC1L Gasterosteus aculeatus ENSGACG00000002792 I 0.839
PABPC1L Anolis carolinensis ENSACAG00000011841 I 0.839
D3ZEY8_RAT Rattus norvegicus ENSRNOG00000028592 I 0.832
ENSACAG00000002544 Anolis carolinensis ENSACAG00000002544 I 0.828
PABPC1L Takifugu rubripes ENSTRUG00000011085 I 0.828
PABPC1L Taeniopygia guttata ENSTGUG00000005114 I 0.828
Q98SP8 Xenopus laevis Q98SP8 I 0.824
AAH80020 Xenopus laevis AAH80020 I 0.824
AAK29408 Xenopus laevis AAK29408 I 0.824
pabpc4 Xenopus tropicalis ENSXETG00000010946 I 0.824
XM_001373066.1 Monodelphis domestica ENSMODG00000013156 I 0.821
LOC100056021 Equus caballus ENSECAG00000020699 I 0.821
AAH71118 Xenopus laevis AAH71118 I 0.821
Q6GR16 Xenopus laevis Q6GR16 I 0.821
ENSMICG00000016633 Microcebus murinus ENSMICG00000016633 I 0.814
pabpc1l Xenopus tropicalis ENSXETG00000022831 I 0.810
PABPC1L Monodelphis domestica ENSMODG00000016198 I 0.803
pabpc1l Danio rerio ENSDARG00000002597 I 0.803
PABPC1L Oryzias latipes ENSORLG00000010322 I 0.795
Ame_R019277 Ailuropoda melanoleuca Ame_R019277 I 0.785
Ame_R005305 Ailuropoda melanoleuca Ame_R005305 I 0.781
PABPC1L Macropus eugenii ENSMEUG00000007905 I 0.781
PABPC1L Bos taurus ENSBTAG00000016849 I 0.781
PABPC1L Sus scrofa ENSSSCG00000007382 I 0.778
amel4_ncbi_hmm1364 Apis mellifera amel4_ncbi_hmm1364 I 0.777
amel4_ncbi_hmm1700 Apis mellifera amel4_ncbi_hmm1700 I 0.777
amel4_ncbi_hmm2036 Apis mellifera amel4_ncbi_hmm2036 I 0.777
PABPC1L Oryctolagus cuniculus ENSOCUG00000003005 I 0.774
PABPC1L Loxodonta africana ENSLAFG00000003553 I 0.774
ENSMICG00000009121 Microcebus murinus ENSMICG00000009121 I 0.771
PABPC1L Pteropus vampyrus ENSPVAG00000012663 I 0.771
PABPC1L Canis familiaris ENSCAFG00000009573 I 0.771
Q2VIP1_9PRIM Gorilla gorilla ENSGGOG00000006785 I 0.768
BGIBMGA003469 Bombyx mori BGIBMGA003469 I 0.767
PHUM617090 Pediculus humanus PHUM617090 I 0.767
PABPC1L Pan troglodytes ENSPTRG00000013531 I 0.763
PABPC1L Microcebus murinus ENSMICG00000000974 I 0.763
PABPC4 Procavia capensis ENSPCAG00000003341 I 0.763
PABPC1L Macaca mulatta ENSMMUG00000013209 I 0.763
PABPC1L Ochotona princeps ENSOPRG00000011846 I 0.763
LOC100070836 Equus caballus ENSECAG00000022681 I 0.763
PABPC1L Homo sapiens ENSG00000101104 I 0.760
PABPC1L Gorilla gorilla ENSGGOG00000004584 I 0.760
ENSPPYG00000011042 Pongo pygmaeus ENSPPYG00000011042 I 0.760
PABPC1L Tarsius syrichta ENSTSYG00000006645 I 0.756
PABPC1L Erinaceus europaeus ENSEEUG00000005978 I 0.756
CPIJ007980 Culex quinquefasciatus CPIJ007980 I 0.756
nasonia_NCBI_hmm390743 Nasonia vitripennis nasonia_NCBI_hmm390743 I 0.756
CpipJ_CPIJ007980 Culex pipiens CpipJ_CPIJ007980 I 0.756
nasonia_NCBI_hmm386743 Nasonia vitripennis nasonia_NCBI_hmm386743 I 0.756
nasonia_NCBI_hmm394743 Nasonia vitripennis nasonia_NCBI_hmm394743 I 0.756
ISCW014211 Ixodes scapularis ISCW014211 I 0.754
AAEL010318 Aedes aegypti AAEL010318 I 0.753
PABPC1L Tetraodon nigroviridis ENSTNIG00000017903 I 0.753
BDE_estExt_fgenesh1_pg.C_380037 Daphnia pulex BDE_estExt_fgenesh1_pg.C_380037 I 0.750
XM_001379460.1 Monodelphis domestica ENSMODG00000015024 I 0.749
PABPC1L Callithrix jacchus ENSCJAG00000017628 I 0.749
PABPC1L Cavia porcellus ENSCPOG00000013633 I 0.749
ENSCING00000002796 Ciona intestinalis ENSCING00000002796 I 0.746
PABPC1L Tursiops truncatus ENSTTRG00000007618 I 0.746
DGIL_AUG5s5076g2t1 Acyrtosiphon pisum DGIL_AUG5s5076g2t1 I 0.742
AGAP011092 Anopheles gambiae AGAP011092 I 0.742
ENSMODG00000012040 Monodelphis domestica ENSMODG00000012040 I 0.742
estExt_Genewise1.C_1790010 Capitella teleta estExt_Genewise1.C_1790010 I 0.739
ENSCSAVG00000004246 Ciona savignyi ENSCSAVG00000004246 I 0.739
ENSMLUG00000012245 Myotis lucifugus ENSMLUG00000012245 I 0.738
gw.1.65.1 Branchiostoma floridae gw.1.65.1 I 0.735
e_gw.313.40.1 Branchiostoma floridae e_gw.313.40.1 I 0.735
Pabpc1l Mus musculus ENSMUSG00000054582 I 0.731
fgenesh1_pm.scaffold_278000002 Nematostella vectensis fgenesh1_pm.scaffold_278000002 I 0.729
Pabpc1l Rattus norvegicus ENSRNOG00000012750 I 0.728
XP_801795.2 Strongylocentrotus purpuratus XP_801795.2 I 0.725
XP_001177907.1 Strongylocentrotus purpuratus XP_001177907.1 I 0.725
e_gw1.115.135.1 Lottia gigantea e_gw1.115.135.1 I 0.724
GH21052 Drosophila grimshawi FBgn0128514 I 0.722
185682 Helobdella robusta 185682 I 0.721
PABPC4 Spermophilus tridecemlineatus ENSSTOG00000010416 I 0.720
DGIL_AUG5s9152g1t1 Acyrtosiphon pisum DGIL_AUG5s9152g1t1 I 0.717
PABPC4 Otolemur garnettii ENSOGAG00000004067 I 0.717
XP_002156904.1 Hydra magnipapillata XP_002156904.1 I 0.715
XP_002156940.1 Hydra magnipapillata XP_002156940.1 I 0.715
GI18654 Drosophila mojavensis FBgn0141393 I 0.715
GJ21671 Drosophila virilis FBgn0208790 I 0.715
ENSCSAVG00000003102 Ciona savignyi ENSCSAVG00000003102 I 0.710
GA18673-RA Drosophila pseudoobscura FBgn0078673 I 0.708
GL11548 Drosophila persimilis FBgn0149157 I 0.708
GK19652 Drosophila willistoni FBgn0221650 I 0.708
estExt_Genewise1.C_sca_1150143 Lottia gigantea estExt_Genewise1.C_sca_1150143 I 0.707
GF12652 Drosophila ananassae FBgn0089688 I 0.704
GE11925 Drosophila yakuba FBgn0229707 I 0.704
DGIL_AUG5s1591g1t1 Acyrtosiphon pisum DGIL_AUG5s1591g1t1 I 0.703
GG21846 Drosophila erecta FBgn0114024 I 0.701