P20965 (Xenopus laevis)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 P20965 T59715_0.6 Xenbase (2010-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
PABPC1
M146_0.6 		Homo sapiens ARAAAAM RNAcompete
Ray et al.(2013)
RNCMPT00155 		0.943
PABPC1
M349_0.6 		Homo sapiens ACDAAYM SELEX
Cook et al.(2011)
950_7908267 		0.943
PABPC1
M275_0.6 		Homo sapiens AAAAA SELEX
Cook et al.(2011)
24_7908267 		0.943
PABPC3
M144_0.6 		Homo sapiens RAAAACM RNAcompete
Ray et al.(2013)
RNCMPT00153 		0.882
PABPC4
M042_0.6 		Homo sapiens AAAAAAR RNAcompete
Ray et al.(2013)
RNCMPT00043 		0.857
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
P20965 RRM 13 83
P20965 RRM 101 169
P20965 RRM 193 262
P20965 RRM 296 364

Links

Other RRM family RBPs
Other Xenopus laevis RBPs

175 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
AAH52100 Xenopus laevis AAH52100 I 1.000
CAA40721 Xenopus laevis CAA40721 I 1.000
AAA60936 Xenopus laevis AAA60936 I 0.996
pabpc1 Xenopus tropicalis ENSXETG00000006635 I 0.968
Pabpc1 Rattus norvegicus ENSRNOG00000008639 I 0.946
ENSACAG00000016470 Anolis carolinensis ENSACAG00000016470 I 0.946
Pabpc1 Mus musculus ENSMUSG00000022283 I 0.946
AAH72110 Xenopus laevis AAH72110 I 0.946
PABPC1 Taeniopygia guttata ENSTGUG00000012067 I 0.946
AAI08463 Xenopus laevis AAI08463 I 0.946
Q6IP09 Xenopus laevis Q6IP09 I 0.946
ENSOANG00000007307 Ornithorhynchus anatinus ENSOANG00000007307 I 0.946
ENSLAFG00000013994 Loxodonta africana ENSLAFG00000013994 I 0.943
PABPC1 Homo sapiens ENSG00000070756 D 0.943
PABPC1 Macaca mulatta ENSMMUG00000017786 I 0.943
ENSSSCG00000006063 Sus scrofa ENSSSCG00000006063 I 0.943
LOC100413032 Callithrix jacchus ENSCJAG00000015833 I 0.943
ENSTTRG00000004689 Tursiops truncatus ENSTTRG00000004689 I 0.943
ENSPVAG00000016640 Pteropus vampyrus ENSPVAG00000016640 I 0.943
ENSPPYG00000018790 Pongo pygmaeus ENSPPYG00000018790 I 0.943
ENSOPRG00000009667 Ochotona princeps ENSOPRG00000009667 I 0.943
ENSOCUG00000004354 Oryctolagus cuniculus ENSOCUG00000004354 I 0.943
ENSOCUG00000023935 Oryctolagus cuniculus ENSOCUG00000023935 I 0.943
ENSCAFG00000000567 Canis familiaris ENSCAFG00000000567 I 0.943
XR_030308.1 Monodelphis domestica ENSMODG00000006222 I 0.939
XR_023909.1 Pan troglodytes ENSPTRG00000020475 I 0.939
pabpc1a Danio rerio ENSDARG00000017219 I 0.932
PABPC3 Oryzias latipes ENSORLG00000002691 I 0.928
PABPC3 Takifugu rubripes ENSTRUG00000011577 I 0.925
Ame_R001741 Ailuropoda melanoleuca Ame_R001741 I 0.921
PABPC3 Gasterosteus aculeatus ENSGACG00000003572 I 0.921
ENSTSYG00000004229 Tarsius syrichta ENSTSYG00000004229 I 0.921
ENSTRUG00000003767 Takifugu rubripes ENSTRUG00000003767 I 0.921
ENSTNIG00000009153 Tetraodon nigroviridis ENSTNIG00000009153 I 0.921
pabpc1b Danio rerio ENSDARG00000021140 I 0.918
LOC100411130 Callithrix jacchus ENSCJAG00000018953 I 0.910
ENSGACG00000003771 Gasterosteus aculeatus ENSGACG00000003771 I 0.907
XM_001367383.1 Monodelphis domestica ENSMODG00000017105 I 0.900
ENSORLG00000003008 Oryzias latipes ENSORLG00000003008 I 0.892
PABPC3 Macaca mulatta ENSMMUG00000020835 I 0.892
ENSPPYG00000005219 Pongo pygmaeus ENSPPYG00000005219 I 0.892
AAH73435 Xenopus laevis AAH73435 I 0.889
PABPC3 Tetraodon nigroviridis ENSTNIG00000013307 I 0.888
PABPC4 Gallus gallus ENSGALG00000003800 I 0.885
PABPC4 Taeniopygia guttata ENSTGUG00000001266 I 0.885
Q2VIP2_PANTR Pan troglodytes ENSPTRG00000022593 I 0.882
Pabpc3 Rattus norvegicus ENSRNOG00000017367 I 0.882
PABPC3 Homo sapiens ENSG00000151846 D 0.882
Pabpc6 Mus musculus ENSMUSG00000046173 I 0.878
ENSOANG00000010001 Ornithorhynchus anatinus ENSOANG00000010001 I 0.878
XM_001365232.1 Monodelphis domestica ENSMODG00000017657 I 0.875
Pabpc2 Mus musculus ENSMUSG00000051732 I 0.871
Pabpc2 Rattus norvegicus ENSRNOG00000014527 I 0.871
pabpc4 Danio rerio ENSDARG00000059259 I 0.864
PABPC4 Tetraodon nigroviridis ENSTNIG00000016902 I 0.860
PABPC4 Oryzias latipes ENSORLG00000017479 I 0.860
A6MKJ4_CALJA Callithrix jacchus ENSCJAG00000002512 I 0.857
PABPC4 Gorilla gorilla ENSGGOG00000004002 I 0.857
PABPC4 Homo sapiens ENSG00000090621 D 0.857
PABPC4 Cavia porcellus ENSCPOG00000009552 I 0.857
D4AC21_RAT Rattus norvegicus ENSRNOG00000015642 I 0.857
Q8QGJ7_FUGRU Takifugu rubripes ENSTRUG00000005907 I 0.857
PABPC4 Gasterosteus aculeatus ENSGACG00000007179 I 0.857
ENSPPYG00000001506 Pongo pygmaeus ENSPPYG00000001506 I 0.857
PABPC4 Pan troglodytes ENSPTRG00000000573 I 0.857
PABPC4 Canis familiaris ENSCAFG00000003081 I 0.853
LOC100054235 Equus caballus ENSECAG00000009396 I 0.853
PABPC4 Sus scrofa ENSSSCG00000003660 I 0.853
ENSMICG00000000431 Microcebus murinus ENSMICG00000000431 I 0.853
PABPC4 Macaca mulatta ENSMMUG00000007497 I 0.853
A4IFC3_BOVIN Bos taurus ENSBTAG00000017125 I 0.853
PABPC4 Loxodonta africana ENSLAFG00000000151 I 0.853
Gm10110 Mus musculus ENSMUSG00000062093 I 0.849
PABPC4 Oryctolagus cuniculus ENSOCUG00000000562 I 0.849
PABPC1L Gallus gallus ENSGALG00000004123 I 0.849
PABPC4 Ochotona princeps ENSOPRG00000011984 I 0.849
PABPC1L Meleagris gallopavo ENSMGAG00000003674 I 0.849
PABPC4 Erinaceus europaeus ENSEEUG00000002962 I 0.846
Pabpc4 Mus musculus ENSMUSG00000011257 I 0.846
PABPC1L Gasterosteus aculeatus ENSGACG00000002792 I 0.842
PABPC1L Anolis carolinensis ENSACAG00000011841 I 0.842
D3ZEY8_RAT Rattus norvegicus ENSRNOG00000028592 I 0.835
PABPC1L Takifugu rubripes ENSTRUG00000011085 I 0.832
ENSACAG00000002544 Anolis carolinensis ENSACAG00000002544 I 0.832
AAK29408 Xenopus laevis AAK29408 I 0.828
Q98SP8 Xenopus laevis Q98SP8 I 0.828
PABPC1L Taeniopygia guttata ENSTGUG00000005114 I 0.828
pabpc4 Xenopus tropicalis ENSXETG00000010946 I 0.828
AAH80020 Xenopus laevis AAH80020 I 0.828
Q6GR16 Xenopus laevis Q6GR16 I 0.824
LOC100056021 Equus caballus ENSECAG00000020699 I 0.824
AAH71118 Xenopus laevis AAH71118 I 0.824
XM_001373066.1 Monodelphis domestica ENSMODG00000013156 I 0.824
ENSMICG00000016633 Microcebus murinus ENSMICG00000016633 I 0.817
pabpc1l Xenopus tropicalis ENSXETG00000022831 I 0.814
PABPC1L Monodelphis domestica ENSMODG00000016198 I 0.806
pabpc1l Danio rerio ENSDARG00000002597 I 0.806
PABPC1L Oryzias latipes ENSORLG00000010322 I 0.799
Ame_R019277 Ailuropoda melanoleuca Ame_R019277 I 0.789
PABPC1L Bos taurus ENSBTAG00000016849 I 0.785
PABPC1L Macropus eugenii ENSMEUG00000007905 I 0.785
Ame_R005305 Ailuropoda melanoleuca Ame_R005305 I 0.785
PABPC1L Sus scrofa ENSSSCG00000007382 I 0.781
amel4_ncbi_hmm1364 Apis mellifera amel4_ncbi_hmm1364 I 0.781
amel4_ncbi_hmm2036 Apis mellifera amel4_ncbi_hmm2036 I 0.781
amel4_ncbi_hmm1700 Apis mellifera amel4_ncbi_hmm1700 I 0.781
PABPC1L Oryctolagus cuniculus ENSOCUG00000003005 I 0.778
PABPC1L Loxodonta africana ENSLAFG00000003553 I 0.778
PABPC1L Pteropus vampyrus ENSPVAG00000012663 I 0.774
PABPC1L Canis familiaris ENSCAFG00000009573 I 0.774
ENSMICG00000009121 Microcebus murinus ENSMICG00000009121 I 0.774
Q2VIP1_9PRIM Gorilla gorilla ENSGGOG00000006785 I 0.771
BGIBMGA003469 Bombyx mori BGIBMGA003469 I 0.770
PHUM617090 Pediculus humanus PHUM617090 I 0.770
LOC100070836 Equus caballus ENSECAG00000022681 I 0.767
PABPC1L Microcebus murinus ENSMICG00000000974 I 0.767
PABPC1L Macaca mulatta ENSMMUG00000013209 I 0.767
PABPC4 Procavia capensis ENSPCAG00000003341 I 0.767
PABPC1L Pan troglodytes ENSPTRG00000013531 I 0.767
PABPC1L Ochotona princeps ENSOPRG00000011846 I 0.767
PABPC1L Homo sapiens ENSG00000101104 I 0.763
PABPC1L Gorilla gorilla ENSGGOG00000004584 I 0.763
ENSPPYG00000011042 Pongo pygmaeus ENSPPYG00000011042 I 0.763
PABPC1L Erinaceus europaeus ENSEEUG00000005978 I 0.760
PABPC1L Tarsius syrichta ENSTSYG00000006645 I 0.760
CpipJ_CPIJ007980 Culex pipiens CpipJ_CPIJ007980 I 0.760
nasonia_NCBI_hmm390743 Nasonia vitripennis nasonia_NCBI_hmm390743 I 0.760
nasonia_NCBI_hmm386743 Nasonia vitripennis nasonia_NCBI_hmm386743 I 0.760
CPIJ007980 Culex quinquefasciatus CPIJ007980 I 0.760
nasonia_NCBI_hmm394743 Nasonia vitripennis nasonia_NCBI_hmm394743 I 0.760
ISCW014211 Ixodes scapularis ISCW014211 I 0.757
AAEL010318 Aedes aegypti AAEL010318 I 0.756
PABPC1L Tetraodon nigroviridis ENSTNIG00000017903 I 0.756
PABPC1L Callithrix jacchus ENSCJAG00000017628 I 0.753
PABPC1L Cavia porcellus ENSCPOG00000013633 I 0.753
XM_001379460.1 Monodelphis domestica ENSMODG00000015024 I 0.753
BDE_estExt_fgenesh1_pg.C_380037 Daphnia pulex BDE_estExt_fgenesh1_pg.C_380037 I 0.750
ENSCING00000002796 Ciona intestinalis ENSCING00000002796 I 0.749
PABPC1L Tursiops truncatus ENSTTRG00000007618 I 0.749
AGAP011092 Anopheles gambiae AGAP011092 I 0.746
ENSMODG00000012040 Monodelphis domestica ENSMODG00000012040 I 0.746
ENSCSAVG00000004246 Ciona savignyi ENSCSAVG00000004246 I 0.742
estExt_Genewise1.C_1790010 Capitella teleta estExt_Genewise1.C_1790010 I 0.742
DGIL_AUG5s5076g2t1 Acyrtosiphon pisum DGIL_AUG5s5076g2t1 I 0.742
ENSMLUG00000012245 Myotis lucifugus ENSMLUG00000012245 I 0.742
gw.1.65.1 Branchiostoma floridae gw.1.65.1 I 0.739
e_gw.313.40.1 Branchiostoma floridae e_gw.313.40.1 I 0.739
Pabpc1l Mus musculus ENSMUSG00000054582 I 0.735
fgenesh1_pm.scaffold_278000002 Nematostella vectensis fgenesh1_pm.scaffold_278000002 I 0.732
Pabpc1l Rattus norvegicus ENSRNOG00000012750 I 0.731
XP_801795.2 Strongylocentrotus purpuratus XP_801795.2 I 0.729
XP_001177907.1 Strongylocentrotus purpuratus XP_001177907.1 I 0.729
e_gw1.115.135.1 Lottia gigantea e_gw1.115.135.1 I 0.728
GH21052 Drosophila grimshawi FBgn0128514 I 0.725
185682 Helobdella robusta 185682 I 0.724
PABPC4 Spermophilus tridecemlineatus ENSSTOG00000010416 I 0.724
PABPC4 Otolemur garnettii ENSOGAG00000004067 I 0.720
GI18654 Drosophila mojavensis FBgn0141393 I 0.718
XP_002156904.1 Hydra magnipapillata XP_002156904.1 I 0.718
XP_002156940.1 Hydra magnipapillata XP_002156940.1 I 0.718
GJ21671 Drosophila virilis FBgn0208790 I 0.718
DGIL_AUG5s9152g1t1 Acyrtosiphon pisum DGIL_AUG5s9152g1t1 I 0.717
ENSCSAVG00000003102 Ciona savignyi ENSCSAVG00000003102 I 0.714
GK19652 Drosophila willistoni FBgn0221650 I 0.711
GL11548 Drosophila persimilis FBgn0149157 I 0.711
GA18673-RA Drosophila pseudoobscura FBgn0078673 I 0.711
estExt_Genewise1.C_sca_1150143 Lottia gigantea estExt_Genewise1.C_sca_1150143 I 0.710
GF12652 Drosophila ananassae FBgn0089688 I 0.708
GE11925 Drosophila yakuba FBgn0229707 I 0.708
GG21846 Drosophila erecta FBgn0114024 I 0.704
DGIL_AUG5s1591g1t1 Acyrtosiphon pisum DGIL_AUG5s1591g1t1 I 0.703
PABPC1L Spermophilus tridecemlineatus ENSSTOG00000003739 I 0.703
GM21847 Drosophila sechellia FBgn0176724 I 0.701
GD11341 Drosophila simulans FBgn0183090 I 0.701
pAbp Drosophila melanogaster FBgn0261619 D 0.701