ENSCING00000002796 (Ciona intestinalis)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSCING00000002796 T35369_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
PABPC1
M146_0.6 		Homo sapiens ARAAAAM RNAcompete
Ray et al.(2013)
RNCMPT00155 		0.739
PABPC1
M349_0.6 		Homo sapiens ACDAAYM SELEX
Cook et al.(2011)
950_7908267 		0.739
PABPC1
M275_0.6 		Homo sapiens AAAAA SELEX
Cook et al.(2011)
24_7908267 		0.739
PABPC4
M042_0.6 		Homo sapiens AAAAAAR RNAcompete
Ray et al.(2013)
RNCMPT00043 		0.731
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSCINP00000005712 RRM 14 84
ENSCINP00000005712 RRM 102 170
ENSCINP00000005712 RRM 194 261
ENSCINP00000005712 RRM 302 370
ENSCINP00000005715 RRM 4 74
ENSCINP00000005715 RRM 92 160
ENSCINP00000005715 RRM 184 251
ENSCINP00000005715 RRM 292 336
ENSCINP00000005715 RRM 363 406
ENSCINP00000005723 RRM 14 84
ENSCINP00000005723 RRM 102 170
ENSCINP00000005723 RRM 194 261
ENSCINP00000005723 RRM 302 370

Links

Other RRM family RBPs
Other Ciona intestinalis RBPs

128 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
ENSCSAVG00000004246 Ciona savignyi ENSCSAVG00000004246 I 0.928
ENSCSAVG00000003102 Ciona savignyi ENSCSAVG00000003102 I 0.871
ENSTNIG00000009153 Tetraodon nigroviridis ENSTNIG00000009153 I 0.753
ENSTRUG00000003767 Takifugu rubripes ENSTRUG00000003767 I 0.753
P20965 Xenopus laevis P20965 I 0.749
AAH52100 Xenopus laevis AAH52100 I 0.749
CAA40721 Xenopus laevis CAA40721 I 0.749
PABPC3 Gasterosteus aculeatus ENSGACG00000003572 I 0.749
pabpc1b Danio rerio ENSDARG00000021140 I 0.746
PABPC3 Oryzias latipes ENSORLG00000002691 I 0.746
AAA60936 Xenopus laevis AAA60936 I 0.746
PABPC3 Takifugu rubripes ENSTRUG00000011577 I 0.746
ENSACAG00000016470 Anolis carolinensis ENSACAG00000016470 I 0.742
ENSLAFG00000013994 Loxodonta africana ENSLAFG00000013994 I 0.742
ENSOPRG00000009667 Ochotona princeps ENSOPRG00000009667 I 0.742
ENSOCUG00000004354 Oryctolagus cuniculus ENSOCUG00000004354 I 0.742
LOC100413032 Callithrix jacchus ENSCJAG00000015833 I 0.742
ENSOANG00000007307 Ornithorhynchus anatinus ENSOANG00000007307 I 0.742
PABPC1 Macaca mulatta ENSMMUG00000017786 I 0.742
PABPC1 Taeniopygia guttata ENSTGUG00000012067 I 0.742
ENSOCUG00000023935 Oryctolagus cuniculus ENSOCUG00000023935 I 0.742
ENSPPYG00000018790 Pongo pygmaeus ENSPPYG00000018790 I 0.742
ENSCAFG00000000567 Canis familiaris ENSCAFG00000000567 I 0.742
Pabpc1 Rattus norvegicus ENSRNOG00000008639 I 0.742
PABPC1 Homo sapiens ENSG00000070756 D 0.742
pabpc1a Danio rerio ENSDARG00000017219 I 0.742
ENSSSCG00000006063 Sus scrofa ENSSSCG00000006063 I 0.742
ENSPVAG00000016640 Pteropus vampyrus ENSPVAG00000016640 I 0.742
pabpc1 Xenopus tropicalis ENSXETG00000006635 I 0.742
ENSTTRG00000004689 Tursiops truncatus ENSTTRG00000004689 I 0.742
ENSGACG00000003771 Gasterosteus aculeatus ENSGACG00000003771 I 0.742
Pabpc1 Mus musculus ENSMUSG00000022283 I 0.742
XR_030308.1 Monodelphis domestica ENSMODG00000006222 I 0.739
PABPC1L Takifugu rubripes ENSTRUG00000011085 I 0.739
XR_023909.1 Pan troglodytes ENSPTRG00000020475 I 0.739
AAH72110 Xenopus laevis AAH72110 I 0.735
Q6IP09 Xenopus laevis Q6IP09 I 0.735
AAI08463 Xenopus laevis AAI08463 I 0.735
pabpc4 Danio rerio ENSDARG00000059259 I 0.735
D4AC21_RAT Rattus norvegicus ENSRNOG00000015642 I 0.731
PABPC4 Homo sapiens ENSG00000090621 D 0.731
PABPC1L Gasterosteus aculeatus ENSGACG00000002792 I 0.731
A4IFC3_BOVIN Bos taurus ENSBTAG00000017125 I 0.731
PABPC4 Gallus gallus ENSGALG00000003800 I 0.731
PABPC4 Gasterosteus aculeatus ENSGACG00000007179 I 0.731
PABPC4 Sus scrofa ENSSSCG00000003660 I 0.731
PABPC4 Canis familiaris ENSCAFG00000003081 I 0.731
A6MKJ4_CALJA Callithrix jacchus ENSCJAG00000002512 I 0.731
PABPC4 Cavia porcellus ENSCPOG00000009552 I 0.731
Q8QGJ7_FUGRU Takifugu rubripes ENSTRUG00000005907 I 0.731
PABPC4 Pan troglodytes ENSPTRG00000000573 I 0.731
PABPC4 Taeniopygia guttata ENSTGUG00000001266 I 0.731
LOC100054235 Equus caballus ENSECAG00000009396 I 0.731
PABPC4 Gorilla gorilla ENSGGOG00000004002 I 0.731
ENSMICG00000000431 Microcebus murinus ENSMICG00000000431 I 0.731
PABPC4 Macaca mulatta ENSMMUG00000007497 I 0.731
PABPC4 Oryctolagus cuniculus ENSOCUG00000000562 I 0.731
ENSOANG00000010001 Ornithorhynchus anatinus ENSOANG00000010001 I 0.731
PABPC4 Oryzias latipes ENSORLG00000017479 I 0.731
PABPC4 Ochotona princeps ENSOPRG00000011984 I 0.731
PABPC4 Loxodonta africana ENSLAFG00000000151 I 0.731
ENSPPYG00000001506 Pongo pygmaeus ENSPPYG00000001506 I 0.731
AGAP011092 Anopheles gambiae AGAP011092 I 0.729
PABPC4 Tetraodon nigroviridis ENSTNIG00000016902 I 0.728
pabpc1l Danio rerio ENSDARG00000002597 I 0.728
PABPC4 Erinaceus europaeus ENSEEUG00000002962 I 0.728
Gm10110 Mus musculus ENSMUSG00000062093 I 0.728
Pabpc4 Mus musculus ENSMUSG00000011257 I 0.728
ENSORLG00000003008 Oryzias latipes ENSORLG00000003008 I 0.727
BGIBMGA003469 Bombyx mori BGIBMGA003469 I 0.726
XM_001365232.1 Monodelphis domestica ENSMODG00000017657 I 0.725
Ame_R001741 Ailuropoda melanoleuca Ame_R001741 I 0.724
AAH73435 Xenopus laevis AAH73435 I 0.724
Pabpc2 Rattus norvegicus ENSRNOG00000014527 I 0.724
AAEL010318 Aedes aegypti AAEL010318 I 0.721
PABPC1L Meleagris gallopavo ENSMGAG00000003674 I 0.721
Q98SP8 Xenopus laevis Q98SP8 I 0.721
AAH80020 Xenopus laevis AAH80020 I 0.721
AAK29408 Xenopus laevis AAK29408 I 0.721
ENSTSYG00000004229 Tarsius syrichta ENSTSYG00000004229 I 0.721
PHUM617090 Pediculus humanus PHUM617090 I 0.719
CpipJ_CPIJ007980 Culex pipiens CpipJ_CPIJ007980 I 0.718
CPIJ007980 Culex quinquefasciatus CPIJ007980 I 0.718
PABPC1L Taeniopygia guttata ENSTGUG00000005114 I 0.718
e_gw1.115.135.1 Lottia gigantea e_gw1.115.135.1 I 0.718
XM_001367383.1 Monodelphis domestica ENSMODG00000017105 I 0.717
AAH71118 Xenopus laevis AAH71118 I 0.717
ENSPPYG00000005219 Pongo pygmaeus ENSPPYG00000005219 I 0.717
Q6GR16 Xenopus laevis Q6GR16 I 0.717
PABPC3 Macaca mulatta ENSMMUG00000020835 I 0.717
Pabpc2 Mus musculus ENSMUSG00000051732 I 0.717
PABPC1L Anolis carolinensis ENSACAG00000011841 I 0.717
LOC100411130 Callithrix jacchus ENSCJAG00000018953 I 0.717
PABPC1L Gallus gallus ENSGALG00000004123 I 0.717
pabpc1l Xenopus tropicalis ENSXETG00000022831 I 0.716
ISCW014211 Ixodes scapularis ISCW014211 I 0.715
amel4_ncbi_hmm1364 Apis mellifera amel4_ncbi_hmm1364 I 0.714
amel4_ncbi_hmm1700 Apis mellifera amel4_ncbi_hmm1700 I 0.714
amel4_ncbi_hmm2036 Apis mellifera amel4_ncbi_hmm2036 I 0.714
PABPC3 Tetraodon nigroviridis ENSTNIG00000013307 I 0.713
XP_002156940.1 Hydra magnipapillata XP_002156940.1 I 0.712
XP_002156904.1 Hydra magnipapillata XP_002156904.1 I 0.712
D3ZEY8_RAT Rattus norvegicus ENSRNOG00000028592 I 0.710
estExt_Genewise1.C_1790010 Capitella teleta estExt_Genewise1.C_1790010 I 0.708
nasonia_NCBI_hmm394743 Nasonia vitripennis nasonia_NCBI_hmm394743 I 0.707
DGIL_AUG5s5076g2t1 Acyrtosiphon pisum DGIL_AUG5s5076g2t1 I 0.707
nasonia_NCBI_hmm386743 Nasonia vitripennis nasonia_NCBI_hmm386743 I 0.707
nasonia_NCBI_hmm390743 Nasonia vitripennis nasonia_NCBI_hmm390743 I 0.707
PABPC1L Bos taurus ENSBTAG00000016849 I 0.707
PABPC1L Macropus eugenii ENSMEUG00000007905 I 0.707
ENSMICG00000016633 Microcebus murinus ENSMICG00000016633 I 0.707
PABPC1L Monodelphis domestica ENSMODG00000016198 I 0.707
LOAG_01058 Loa loa LOAG_01058 I 0.705
BDE_estExt_fgenesh1_pg.C_380037 Daphnia pulex BDE_estExt_fgenesh1_pg.C_380037 I 0.705
Bm1_06880 Brugia malayi Bm1_06880 I 0.705
Bm1_16080 Brugia malayi Bm1_16080 I 0.705
Q2VIP2_PANTR Pan troglodytes ENSPTRG00000022593 I 0.703
PABPC1L Canis familiaris ENSCAFG00000009573 I 0.703
PABPC1L Gorilla gorilla ENSGGOG00000004584 I 0.703
PABPC1L Homo sapiens ENSG00000101104 I 0.703
Ame_R005305 Ailuropoda melanoleuca Ame_R005305 I 0.703
PABPC1L Pteropus vampyrus ENSPVAG00000012663 I 0.703
PABPC1L Sus scrofa ENSSSCG00000007382 I 0.703
PABPC1L Macaca mulatta ENSMMUG00000013209 I 0.703
ENSPPYG00000011042 Pongo pygmaeus ENSPPYG00000011042 I 0.703
PABPC1L Pan troglodytes ENSPTRG00000013531 I 0.703
estExt_Genewise1.C_sca_1150143 Lottia gigantea estExt_Genewise1.C_sca_1150143 I 0.700