pabpc1a (Danio rerio)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSDARG00000017219 T36086_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
PABPC1
M146_0.6 		Homo sapiens ARAAAAM RNAcompete
Ray et al.(2013)
RNCMPT00155 		0.946
PABPC1
M349_0.6 		Homo sapiens ACDAAYM SELEX
Cook et al.(2011)
950_7908267 		0.946
PABPC1
M275_0.6 		Homo sapiens AAAAA SELEX
Cook et al.(2011)
24_7908267 		0.946
PABPC3
M144_0.6 		Homo sapiens RAAAACM RNAcompete
Ray et al.(2013)
RNCMPT00153 		0.889
PABPC4
M042_0.6 		Homo sapiens AAAAAAR RNAcompete
Ray et al.(2013)
RNCMPT00043 		0.846
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSDARP00000021064 RRM 13 83
ENSDARP00000021064 RRM 101 169
ENSDARP00000021064 RRM 193 262
ENSDARP00000021064 RRM 296 364

Links

Other RRM family RBPs
Other Danio rerio RBPs

168 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
PABPC3 Takifugu rubripes ENSTRUG00000011577 I 0.968
PABPC3 Gasterosteus aculeatus ENSGACG00000003572 I 0.964
PABPC3 Oryzias latipes ENSORLG00000002691 I 0.961
Pabpc1 Rattus norvegicus ENSRNOG00000008639 I 0.950
Pabpc1 Mus musculus ENSMUSG00000022283 I 0.950
PABPC1 Taeniopygia guttata ENSTGUG00000012067 I 0.950
ENSACAG00000016470 Anolis carolinensis ENSACAG00000016470 I 0.950
ENSOANG00000007307 Ornithorhynchus anatinus ENSOANG00000007307 I 0.950
ENSTTRG00000004689 Tursiops truncatus ENSTTRG00000004689 I 0.946
ENSSSCG00000006063 Sus scrofa ENSSSCG00000006063 I 0.946
PABPC1 Macaca mulatta ENSMMUG00000017786 I 0.946
ENSLAFG00000013994 Loxodonta africana ENSLAFG00000013994 I 0.946
ENSOCUG00000023935 Oryctolagus cuniculus ENSOCUG00000023935 I 0.946
ENSOCUG00000004354 Oryctolagus cuniculus ENSOCUG00000004354 I 0.946
ENSPVAG00000016640 Pteropus vampyrus ENSPVAG00000016640 I 0.946
PABPC1 Homo sapiens ENSG00000070756 D 0.946
ENSOPRG00000009667 Ochotona princeps ENSOPRG00000009667 I 0.946
ENSCAFG00000000567 Canis familiaris ENSCAFG00000000567 I 0.946
ENSPPYG00000018790 Pongo pygmaeus ENSPPYG00000018790 I 0.946
LOC100413032 Callithrix jacchus ENSCJAG00000015833 I 0.946
XR_030308.1 Monodelphis domestica ENSMODG00000006222 I 0.943
XR_023909.1 Pan troglodytes ENSPTRG00000020475 I 0.943
pabpc1 Xenopus tropicalis ENSXETG00000006635 I 0.943
pabpc1b Danio rerio ENSDARG00000021140 I 0.939
ENSTNIG00000009153 Tetraodon nigroviridis ENSTNIG00000009153 I 0.939
ENSTRUG00000003767 Takifugu rubripes ENSTRUG00000003767 I 0.935
PABPC3 Tetraodon nigroviridis ENSTNIG00000013307 I 0.933
AAH52100 Xenopus laevis AAH52100 I 0.932
P20965 Xenopus laevis P20965 I 0.932
CAA40721 Xenopus laevis CAA40721 I 0.932
AAA60936 Xenopus laevis AAA60936 I 0.928
ENSTSYG00000004229 Tarsius syrichta ENSTSYG00000004229 I 0.925
Ame_R001741 Ailuropoda melanoleuca Ame_R001741 I 0.925
ENSGACG00000003771 Gasterosteus aculeatus ENSGACG00000003771 I 0.918
AAH72110 Xenopus laevis AAH72110 I 0.918
AAI08463 Xenopus laevis AAI08463 I 0.918
LOC100411130 Callithrix jacchus ENSCJAG00000018953 I 0.918
Q6IP09 Xenopus laevis Q6IP09 I 0.918
ENSORLG00000003008 Oryzias latipes ENSORLG00000003008 I 0.910
ENSPPYG00000005219 Pongo pygmaeus ENSPPYG00000005219 I 0.903
PABPC3 Macaca mulatta ENSMMUG00000020835 I 0.900
XM_001367383.1 Monodelphis domestica ENSMODG00000017105 I 0.896
Q2VIP2_PANTR Pan troglodytes ENSPTRG00000022593 I 0.892
PABPC3 Homo sapiens ENSG00000151846 D 0.889
Pabpc3 Rattus norvegicus ENSRNOG00000017367 I 0.885
AAH73435 Xenopus laevis AAH73435 I 0.878
Pabpc6 Mus musculus ENSMUSG00000046173 I 0.875
PABPC4 Gallus gallus ENSGALG00000003800 I 0.871
ENSOANG00000010001 Ornithorhynchus anatinus ENSOANG00000010001 I 0.871
Pabpc2 Mus musculus ENSMUSG00000051732 I 0.867
Pabpc2 Rattus norvegicus ENSRNOG00000014527 I 0.867
XM_001365232.1 Monodelphis domestica ENSMODG00000017657 I 0.861
PABPC4 Taeniopygia guttata ENSTGUG00000001266 I 0.860
PABPC4 Cavia porcellus ENSCPOG00000009552 I 0.853
pabpc4 Danio rerio ENSDARG00000059259 I 0.853
PABPC1L Meleagris gallopavo ENSMGAG00000003674 I 0.853
A4IFC3_BOVIN Bos taurus ENSBTAG00000017125 I 0.849
PABPC4 Macaca mulatta ENSMMUG00000007497 I 0.849
PABPC4 Sus scrofa ENSSSCG00000003660 I 0.849
PABPC4 Canis familiaris ENSCAFG00000003081 I 0.849
PABPC4 Loxodonta africana ENSLAFG00000000151 I 0.849
ENSMICG00000000431 Microcebus murinus ENSMICG00000000431 I 0.849
LOC100054235 Equus caballus ENSECAG00000009396 I 0.849
D4AC21_RAT Rattus norvegicus ENSRNOG00000015642 I 0.849
PABPC1L Gallus gallus ENSGALG00000004123 I 0.849
PABPC4 Oryzias latipes ENSORLG00000017479 I 0.849
PABPC4 Homo sapiens ENSG00000090621 D 0.846
PABPC1L Anolis carolinensis ENSACAG00000011841 I 0.846
Gm10110 Mus musculus ENSMUSG00000062093 I 0.846
A6MKJ4_CALJA Callithrix jacchus ENSCJAG00000002512 I 0.846
Q8QGJ7_FUGRU Takifugu rubripes ENSTRUG00000005907 I 0.846
PABPC4 Oryctolagus cuniculus ENSOCUG00000000562 I 0.846
PABPC4 Gorilla gorilla ENSGGOG00000004002 I 0.846
ENSPPYG00000001506 Pongo pygmaeus ENSPPYG00000001506 I 0.846
PABPC4 Gasterosteus aculeatus ENSGACG00000007179 I 0.846
PABPC4 Pan troglodytes ENSPTRG00000000573 I 0.846
PABPC4 Ochotona princeps ENSOPRG00000011984 I 0.842
PABPC4 Tetraodon nigroviridis ENSTNIG00000016902 I 0.842
Pabpc4 Mus musculus ENSMUSG00000011257 I 0.842
PABPC1L Gasterosteus aculeatus ENSGACG00000002792 I 0.842
PABPC4 Erinaceus europaeus ENSEEUG00000002962 I 0.842
PABPC1L Takifugu rubripes ENSTRUG00000011085 I 0.839
Q98SP8 Xenopus laevis Q98SP8 I 0.835
AAH80020 Xenopus laevis AAH80020 I 0.835
Q6GR16 Xenopus laevis Q6GR16 I 0.835
AAH71118 Xenopus laevis AAH71118 I 0.835
AAK29408 Xenopus laevis AAK29408 I 0.835
XM_001373066.1 Monodelphis domestica ENSMODG00000013156 I 0.832
D3ZEY8_RAT Rattus norvegicus ENSRNOG00000028592 I 0.828
PABPC1L Taeniopygia guttata ENSTGUG00000005114 I 0.824
LOC100056021 Equus caballus ENSECAG00000020699 I 0.824
pabpc1l Danio rerio ENSDARG00000002597 I 0.821
pabpc4 Xenopus tropicalis ENSXETG00000010946 I 0.817
ENSMICG00000016633 Microcebus murinus ENSMICG00000016633 I 0.817
pabpc1l Xenopus tropicalis ENSXETG00000022831 I 0.810
ENSACAG00000002544 Anolis carolinensis ENSACAG00000002544 I 0.810
PABPC1L Monodelphis domestica ENSMODG00000016198 I 0.810
PABPC1L Oryzias latipes ENSORLG00000010322 I 0.806
PABPC1L Macropus eugenii ENSMEUG00000007905 I 0.792
PABPC1L Bos taurus ENSBTAG00000016849 I 0.792
Ame_R005305 Ailuropoda melanoleuca Ame_R005305 I 0.792
PABPC1L Oryctolagus cuniculus ENSOCUG00000003005 I 0.789
PABPC1L Sus scrofa ENSSSCG00000007382 I 0.789
ENSMICG00000009121 Microcebus murinus ENSMICG00000009121 I 0.785
Ame_R019277 Ailuropoda melanoleuca Ame_R019277 I 0.785
PABPC1L Pteropus vampyrus ENSPVAG00000012663 I 0.785
PABPC1L Canis familiaris ENSCAFG00000009573 I 0.785
PABPC1L Loxodonta africana ENSLAFG00000003553 I 0.781
PABPC1L Ochotona princeps ENSOPRG00000011846 I 0.778
PABPC1L Macaca mulatta ENSMMUG00000013209 I 0.778
PABPC1L Pan troglodytes ENSPTRG00000013531 I 0.778
LOC100070836 Equus caballus ENSECAG00000022681 I 0.774
PABPC1L Gorilla gorilla ENSGGOG00000004584 I 0.774
ENSPPYG00000011042 Pongo pygmaeus ENSPPYG00000011042 I 0.774
PABPC1L Homo sapiens ENSG00000101104 I 0.774
amel4_ncbi_hmm2036 Apis mellifera amel4_ncbi_hmm2036 I 0.774
BGIBMGA003469 Bombyx mori BGIBMGA003469 I 0.774
amel4_ncbi_hmm1700 Apis mellifera amel4_ncbi_hmm1700 I 0.774
amel4_ncbi_hmm1364 Apis mellifera amel4_ncbi_hmm1364 I 0.774
Q2VIP1_9PRIM Gorilla gorilla ENSGGOG00000006785 I 0.771
PABPC1L Tarsius syrichta ENSTSYG00000006645 I 0.771
ISCW014211 Ixodes scapularis ISCW014211 I 0.768
PABPC1L Microcebus murinus ENSMICG00000000974 I 0.767
PABPC1L Tetraodon nigroviridis ENSTNIG00000017903 I 0.767
PABPC1L Cavia porcellus ENSCPOG00000013633 I 0.763
PABPC4 Procavia capensis ENSPCAG00000003341 I 0.763
PABPC1L Callithrix jacchus ENSCJAG00000017628 I 0.763
PABPC1L Erinaceus europaeus ENSEEUG00000005978 I 0.763
CpipJ_CPIJ007980 Culex pipiens CpipJ_CPIJ007980 I 0.763
CPIJ007980 Culex quinquefasciatus CPIJ007980 I 0.763
PABPC1L Tursiops truncatus ENSTTRG00000007618 I 0.760
nasonia_NCBI_hmm394743 Nasonia vitripennis nasonia_NCBI_hmm394743 I 0.760
AAEL010318 Aedes aegypti AAEL010318 I 0.760
nasonia_NCBI_hmm386743 Nasonia vitripennis nasonia_NCBI_hmm386743 I 0.760
nasonia_NCBI_hmm390743 Nasonia vitripennis nasonia_NCBI_hmm390743 I 0.760
XM_001379460.1 Monodelphis domestica ENSMODG00000015024 I 0.756
PHUM617090 Pediculus humanus PHUM617090 I 0.753
AGAP011092 Anopheles gambiae AGAP011092 I 0.749
estExt_Genewise1.C_1790010 Capitella teleta estExt_Genewise1.C_1790010 I 0.749
e_gw1.115.135.1 Lottia gigantea e_gw1.115.135.1 I 0.746
ENSCING00000002796 Ciona intestinalis ENSCING00000002796 I 0.742
ENSMODG00000012040 Monodelphis domestica ENSMODG00000012040 I 0.742
ENSMLUG00000012245 Myotis lucifugus ENSMLUG00000012245 I 0.742
gw.1.65.1 Branchiostoma floridae gw.1.65.1 I 0.739
DGIL_AUG5s5076g2t1 Acyrtosiphon pisum DGIL_AUG5s5076g2t1 I 0.739
e_gw.313.40.1 Branchiostoma floridae e_gw.313.40.1 I 0.739
BDE_estExt_fgenesh1_pg.C_380037 Daphnia pulex BDE_estExt_fgenesh1_pg.C_380037 I 0.736
fgenesh1_pm.scaffold_278000002 Nematostella vectensis fgenesh1_pm.scaffold_278000002 I 0.736
ENSCSAVG00000004246 Ciona savignyi ENSCSAVG00000004246 I 0.735
Pabpc1l Mus musculus ENSMUSG00000054582 I 0.735
Pabpc1l Rattus norvegicus ENSRNOG00000012750 I 0.735
XP_801795.2 Strongylocentrotus purpuratus XP_801795.2 I 0.732
XP_001177907.1 Strongylocentrotus purpuratus XP_001177907.1 I 0.732
XP_002156904.1 Hydra magnipapillata XP_002156904.1 I 0.729
XP_002156940.1 Hydra magnipapillata XP_002156940.1 I 0.729
estExt_Genewise1.C_sca_1150143 Lottia gigantea estExt_Genewise1.C_sca_1150143 I 0.728
185682 Helobdella robusta 185682 I 0.724
PABPC4 Spermophilus tridecemlineatus ENSSTOG00000010416 I 0.720
PABPC4 Otolemur garnettii ENSOGAG00000004067 I 0.720
GI18654 Drosophila mojavensis FBgn0141393 I 0.715
GH21052 Drosophila grimshawi FBgn0128514 I 0.715
DGIL_AUG5s9152g1t1 Acyrtosiphon pisum DGIL_AUG5s9152g1t1 I 0.710
PABPC1L Spermophilus tridecemlineatus ENSSTOG00000003739 I 0.710
GK19652 Drosophila willistoni FBgn0221650 I 0.708
GJ21671 Drosophila virilis FBgn0208790 I 0.708
ENSCSAVG00000003102 Ciona savignyi ENSCSAVG00000003102 I 0.707
Aqu1.221418 Amphimedon queenslandica Aqu1.221418 N 0.701
GF12652 Drosophila ananassae FBgn0089688 I 0.701