LOC100070744 (Equus caballus)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSECAG00000011435 T36609_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
MSI1
M167_0.6 		Homo sapiens UAGKWRG RNAcompete
Ray et al.(2013)
RNCMPT00176 		0.707
MSI1
M040_0.6 		Homo sapiens UAGUWRG RNAcompete
Ray et al.(2013)
RNCMPT00041 		0.707
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSECAP00000009266 RRM 1 42
ENSECAP00000009266 RRM 62 131

Links

Other RRM family RBPs
Other Equus caballus RBPs

47 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
MSI2 Cavia porcellus ENSCPOG00000008752 N 0.911
MSI2 Tarsius syrichta ENSTSYG00000011839 N 0.893
MSI2 Pteropus vampyrus ENSPVAG00000017053 I 0.882
MSI1 Gorilla gorilla ENSGGOG00000010328 I 0.876
msi1 Danio rerio ENSDARG00000010710 I 0.875
LOC100390978 Callithrix jacchus ENSCJAG00000013998 I 0.842
MSI1 Pan troglodytes ENSPTRG00000005531 I 0.832
ENSMGAG00000008742 Meleagris gallopavo ENSMGAG00000008742 I 0.804
MSI2 Pan troglodytes ENSPTRG00000009437 I 0.800
MSI2 Oryctolagus cuniculus ENSOCUG00000010440 I 0.800
Msi2 Mus musculus ENSMUSG00000069769 I 0.800
MSI2 Gorilla gorilla ENSGGOG00000013182 I 0.800
MSI2 Homo sapiens ENSG00000153944 I 0.800
MSI2 Microcebus murinus ENSMICG00000013598 I 0.800
MSI2 Macaca mulatta ENSMMUG00000002069 I 0.786
msi2b Danio rerio ENSDARG00000032614 I 0.786
MSI1 Oryctolagus cuniculus ENSOCUG00000027716 I 0.781
MSI1 Felis catus ENSFCAG00000011007 I 0.780
AAI69841 Xenopus laevis AAI69841 I 0.779
MSI2 Canis familiaris ENSCAFG00000017418 I 0.779
AAA50004 Xenopus laevis AAA50004 I 0.779
Ame_R019333 Ailuropoda melanoleuca Ame_R019333 I 0.773
MSI1 Macaca mulatta ENSMMUG00000031527 I 0.773
MSI1 Echinops telfairi ENSETEG00000004756 I 0.772
Msi1 Rattus norvegicus ENSRNOG00000001156 I 0.766
MSI1 Pteropus vampyrus ENSPVAG00000002225 I 0.764
amel4_ncbi_hmm21060 Apis mellifera amel4_ncbi_hmm21060 N 0.759
msi2a Danio rerio ENSDARG00000033901 I 0.757
LOC100053469 Equus caballus ENSECAG00000017526 I 0.742
Msi1 Mus musculus ENSMUSG00000054256 I 0.731
AGAP006656 Anopheles gambiae AGAP006656 N 0.724
MSI1 Tetraodon nigroviridis ENSTNIG00000011469 I 0.714
MSI1 Takifugu rubripes ENSTRUG00000016249 I 0.714
MSI1 Gasterosteus aculeatus ENSGACG00000012679 I 0.714
ENSPPYG00000005027 Pongo pygmaeus ENSPPYG00000005027 I 0.712
MSI1 Homo sapiens ENSG00000135097 D 0.707
MSI1 Taeniopygia guttata ENSTGUG00000009534 I 0.707
MSI1 Cavia porcellus ENSCPOG00000012361 I 0.707
MSI1 Callithrix jacchus ENSCJAG00000008578 I 0.707
MSI1 Tursiops truncatus ENSTTRG00000005663 I 0.707
MSI1 Anolis carolinensis ENSACAG00000002762 I 0.707
nasonia_NCBI_hmm598804 Nasonia vitripennis nasonia_NCBI_hmm598804 N 0.707
CBF67566 Xenopus laevis CBF67566 I 0.700
CBU92439 Xenopus laevis CBU92439 I 0.700
AAA49920 Xenopus laevis AAA49920 I 0.700
AAH82667 Xenopus laevis AAH82667 I 0.700
msi1 Xenopus tropicalis ENSXETG00000012216 I 0.700