CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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ptbp1a
(
Danio rerio
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
ENSDARG00000019362
T36097_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
PTBP1
M303_0.6
Homo sapiens
Sequence logo not available
UCUU
SELEX
Cook et al.(2011)
46_9214659
0.840
PTBP1
M228_0.6
Homo sapiens
HYUUUYU
RNAcompete
Ray et al.(2013)
RNCMPT00269
0.840
PTBP1
M227_0.6
Homo sapiens
HYUUUYU
RNAcompete
Ray et al.(2013)
RNCMPT00268
0.840
For this family, RBPs with RBD identity >
0.7
will likely have a similar motif
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSDARP00000011705
RRM
76
133
IHVRKLPNDINEAEVISLGLPFGKVTNLLMLKGKNQAFLEMNTEESAQTMVSYYSSVT
ENSDARP00000011705
RRM
196
262
VIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALVQYSDGMTAQHAKLSLDGQNIYNACCT
ENSDARP00000011705
RRM
382
448
LLVSNLNPESVTPQCLFILFGVYGDVMRVKILFNKKENALVQMSDGTQAQLAMSHLNGQKLYGKALR
ENSDARP00000011705
RRM
499
563
LHLSNIPPSVTEDDLRGLFLSSGAVVKAFKFFQKDRKMALIQLASVEEAIESLIKFHNHDLGENH
Links
Other
RRM
family RBPs
Other
Danio rerio
RBPs
84 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
PTBP1
Gasterosteus aculeatus
ENSGACG00000011048
I
0.907
PTBP1
Oryzias latipes
ENSORLG00000011430
I
0.900
PTBP1
Takifugu rubripes
ENSTRUG00000011360
I
0.887
ptbp1b
Danio rerio
ENSDARG00000031907
I
0.887
PTBP1
Macropus eugenii
ENSMEUG00000006710
I
0.856
PTBP1
Monodelphis domestica
ENSMODG00000006302
I
0.856
Q5F456_CHICK
Gallus gallus
ENSGALG00000001962
I
0.856
PTBP1
Meleagris gallopavo
ENSMGAG00000003503
I
0.856
PTBP1
Taeniopygia guttata
ENSTGUG00000000641
I
0.852
PTBP1
Ornithorhynchus anatinus
ENSOANG00000009191
I
0.845
AAH45068
Xenopus laevis
AAH45068
I
0.845
Ptbp1
Mus musculus
ENSMUSG00000006498
I
0.844
PTBP1
Canis familiaris
ENSCAFG00000019693
I
0.844
PTBP1
Homo sapiens
ENSG00000011304
D
0.840
ENSPPYG00000009289
Pongo pygmaeus
ENSPPYG00000009289
I
0.840
Ptbp1
Rattus norvegicus
ENSRNOG00000010448
I
0.840
XR_025154.1
Pan troglodytes
ENSPTRG00000010165
I
0.840
PTBP1
Callithrix jacchus
ENSCJAG00000020162
I
0.837
PTBP1
Sus scrofa
ENSSSCG00000013421
I
0.837
AAF00041
Xenopus laevis
AAF00041
I
0.833
PTBP1
Pteropus vampyrus
ENSPVAG00000008288
I
0.833
PTBP1
Tursiops truncatus
ENSTTRG00000003439
I
0.829
PTBP1
Cavia porcellus
ENSCPOG00000025512
I
0.829
PTBP1
Equus caballus
ENSECAG00000018845
I
0.825
PTBP1
Oryzias latipes
ENSORLG00000014019
I
0.817
PTBP1
Takifugu rubripes
ENSTRUG00000010168
I
0.806
Ptbp1
Dipodomys ordii
ENSDORG00000002835
I
0.790
PTBP1
Macaca mulatta
ENSMMUG00000016450
I
0.790
ptbp1
Xenopus tropicalis
ENSXETG00000021661
I
0.787
ROD1
Sus scrofa
ENSSSCG00000005466
I
0.786
ROD1
Danio rerio
ENSDARG00000043757
I
0.786
ROD1
Equus caballus
ENSECAG00000021243
I
0.786
ROD1
Anolis carolinensis
ENSACAG00000017316
I
0.783
ENSMLUG00000003320
Myotis lucifugus
ENSMLUG00000003320
I
0.782
ROD1
Oryctolagus cuniculus
ENSOCUG00000017670
I
0.775
Rod1
Rattus norvegicus
ENSRNOG00000016334
I
0.775
Rod1
Mus musculus
ENSMUSG00000028382
I
0.775
rod1
Xenopus tropicalis
ENSXETG00000002225
I
0.775
ROD1
Cavia porcellus
ENSCPOG00000011586
I
0.775
ROD1
Bos taurus
ENSBTAG00000016750
I
0.774
PTBP1
Loxodonta africana
ENSLAFG00000027110
I
0.774
ROD1
Loxodonta africana
ENSLAFG00000011358
I
0.771
ROD1
Macaca mulatta
ENSMMUG00000000464
I
0.771
ENSPPYG00000019504
Pongo pygmaeus
ENSPPYG00000019504
I
0.771
ROD1
Gorilla gorilla
ENSGGOG00000001755
I
0.771
ROD1
Homo sapiens
ENSG00000119314
I
0.771
ROD1
Monodelphis domestica
ENSMODG00000005502
I
0.771
ROD1
Pan troglodytes
ENSPTRG00000021263
I
0.771
ENSETEG00000006890
Echinops telfairi
ENSETEG00000006890
I
0.767
AAH97557
Xenopus laevis
AAH97557
I
0.764
ROD1
Callithrix jacchus
ENSCJAG00000017686
I
0.760
PTBP1
Procavia capensis
ENSPCAG00000007614
I
0.755
ROD1
Canis familiaris
ENSCAFG00000003015
I
0.752
PTBP1
Gasterosteus aculeatus
ENSGACG00000013587
I
0.751
PTBP2
Anolis carolinensis
ENSACAG00000005600
I
0.748
PTBP2
Loxodonta africana
ENSLAFG00000017343
I
0.748
PTBP2
Monodelphis domestica
ENSMODG00000004211
I
0.748
PTBP2
Tursiops truncatus
ENSTTRG00000012904
I
0.744
Ame_R002925
Ailuropoda melanoleuca
Ame_R002925
I
0.744
PTBP2
Canis familiaris
ENSCAFG00000020080
I
0.744
PTBP2
Cavia porcellus
ENSCPOG00000003762
I
0.744
PTBP2
Vicugna pacos
ENSVPAG00000002841
I
0.744
ENSPPYG00000001132
Pongo pygmaeus
ENSPPYG00000001132
I
0.744
PTBP2
Macaca mulatta
ENSMMUG00000016130
I
0.744
Ptbp2
Mus musculus
ENSMUSG00000028134
I
0.744
PTBP2
Ornithorhynchus anatinus
ENSOANG00000004656
I
0.744
PTBP2
Meleagris gallopavo
ENSMGAG00000007308
I
0.744
PTBP2
Gorilla gorilla
ENSGGOG00000000659
I
0.744
PTBP2
Homo sapiens
ENSG00000117569
I
0.744
Q9YI60_CHICK
Gallus gallus
ENSGALG00000005552
I
0.744
PTBP2
Tarsius syrichta
ENSTSYG00000002576
I
0.744
PTBP2
Oryctolagus cuniculus
ENSOCUG00000017608
I
0.744
Ptbp2
Rattus norvegicus
ENSRNOG00000010827
I
0.744
PTBP2
Pan troglodytes
ENSPTRG00000000987
I
0.744
LOC100057336
Equus caballus
ENSECAG00000015783
I
0.741
PTBP2
Myotis lucifugus
ENSMLUG00000002522
I
0.736
ROD1
Takifugu rubripes
ENSTRUG00000007042
I
0.733
PTBP2
Danio rerio
ENSDARG00000015901
I
0.733
PTBP2
Taeniopygia guttata
ENSTGUG00000005558
I
0.733
PTBP2
Tetraodon nigroviridis
ENSTNIG00000018950
I
0.731
ROD1
Tetraodon nigroviridis
ENSTNIG00000002790
I
0.730
PTBP2
Oryzias latipes
ENSORLG00000013557
I
0.720
PTBP2
Gasterosteus aculeatus
ENSGACG00000014892
I
0.716
PTBP2
Oryzias latipes
ENSORLG00000019191
I
0.713