ptbp1b (Danio rerio)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSDARG00000031907 T36119_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
PTBP1
M303_0.6 		Homo sapiens Sequence logo not available UCUU SELEX
Cook et al.(2011)
46_9214659 		0.820
PTBP1
M228_0.6 		Homo sapiens HYUUUYU RNAcompete
Ray et al.(2013)
RNCMPT00269 		0.820
PTBP1
M227_0.6 		Homo sapiens HYUUUYU RNAcompete
Ray et al.(2013)
RNCMPT00268 		0.820
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSDARP00000039821 RRM 94 150
ENSDARP00000039821 RRM 214 280
ENSDARP00000039821 RRM 393 459
ENSDARP00000039821 RRM 510 574

Links

Other RRM family RBPs
Other Danio rerio RBPs

84 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
PTBP1 Gasterosteus aculeatus ENSGACG00000011048 I 0.891
ptbp1a Danio rerio ENSDARG00000019362 I 0.887
PTBP1 Takifugu rubripes ENSTRUG00000011360 I 0.864
PTBP1 Oryzias latipes ENSORLG00000011430 I 0.854
Q5F456_CHICK Gallus gallus ENSGALG00000001962 I 0.836
PTBP1 Meleagris gallopavo ENSMGAG00000003503 I 0.836
AAH45068 Xenopus laevis AAH45068 I 0.833
PTBP1 Monodelphis domestica ENSMODG00000006302 I 0.832
PTBP1 Macropus eugenii ENSMEUG00000006710 I 0.832
PTBP1 Oryzias latipes ENSORLG00000014019 I 0.832
PTBP1 Canis familiaris ENSCAFG00000019693 I 0.828
PTBP1 Taeniopygia guttata ENSTGUG00000000641 I 0.828
ENSPPYG00000009289 Pongo pygmaeus ENSPPYG00000009289 I 0.820
XR_025154.1 Pan troglodytes ENSPTRG00000010165 I 0.820
PTBP1 Homo sapiens ENSG00000011304 D 0.820
PTBP1 Sus scrofa ENSSSCG00000013421 I 0.820
Ptbp1 Mus musculus ENSMUSG00000006498 I 0.820
PTBP1 Tursiops truncatus ENSTTRG00000003439 I 0.820
PTBP1 Ornithorhynchus anatinus ENSOANG00000009191 I 0.817
PTBP1 Pteropus vampyrus ENSPVAG00000008288 I 0.816
Ptbp1 Rattus norvegicus ENSRNOG00000010448 I 0.816
AAF00041 Xenopus laevis AAF00041 I 0.813
PTBP1 Equus caballus ENSECAG00000018845 I 0.812
PTBP1 Callithrix jacchus ENSCJAG00000020162 I 0.812
PTBP1 Cavia porcellus ENSCPOG00000025512 I 0.809
PTBP1 Takifugu rubripes ENSTRUG00000010168 I 0.798
ROD1 Sus scrofa ENSSSCG00000005466 I 0.781
ROD1 Equus caballus ENSECAG00000021243 I 0.781
PTBP1 Macaca mulatta ENSMMUG00000016450 I 0.777
ROD1 Danio rerio ENSDARG00000043757 I 0.777
ROD1 Anolis carolinensis ENSACAG00000017316 I 0.774
ptbp1 Xenopus tropicalis ENSXETG00000021661 I 0.770
ROD1 Bos taurus ENSBTAG00000016750 I 0.770
Rod1 Rattus norvegicus ENSRNOG00000016334 I 0.767
rod1 Xenopus tropicalis ENSXETG00000002225 I 0.767
ROD1 Oryctolagus cuniculus ENSOCUG00000017670 I 0.767
ROD1 Monodelphis domestica ENSMODG00000005502 I 0.767
Rod1 Mus musculus ENSMUSG00000028382 I 0.767
ROD1 Cavia porcellus ENSCPOG00000011586 I 0.767
ENSMLUG00000003320 Myotis lucifugus ENSMLUG00000003320 I 0.766
PTBP1 Loxodonta africana ENSLAFG00000027110 I 0.766
ROD1 Loxodonta africana ENSLAFG00000011358 I 0.763
ROD1 Gorilla gorilla ENSGGOG00000001755 I 0.763
ROD1 Homo sapiens ENSG00000119314 I 0.763
ROD1 Pan troglodytes ENSPTRG00000021263 I 0.763
ROD1 Macaca mulatta ENSMMUG00000000464 I 0.763
ENSPPYG00000019504 Pongo pygmaeus ENSPPYG00000019504 I 0.763
ENSETEG00000006890 Echinops telfairi ENSETEG00000006890 I 0.758
Ptbp1 Dipodomys ordii ENSDORG00000002835 I 0.758
ROD1 Callithrix jacchus ENSCJAG00000017686 I 0.751
AAH97557 Xenopus laevis AAH97557 I 0.747
PTBP1 Gasterosteus aculeatus ENSGACG00000013587 I 0.742
PTBP2 Anolis carolinensis ENSACAG00000005600 I 0.739
Q9YI60_CHICK Gallus gallus ENSGALG00000005552 I 0.735
PTBP2 Meleagris gallopavo ENSMGAG00000007308 I 0.735
PTBP2 Loxodonta africana ENSLAFG00000017343 I 0.732
PTBP2 Taeniopygia guttata ENSTGUG00000005558 I 0.732
ROD1 Canis familiaris ENSCAFG00000003015 I 0.732
PTBP1 Procavia capensis ENSPCAG00000007614 I 0.730
PTBP2 Tetraodon nigroviridis ENSTNIG00000018950 I 0.730
PTBP2 Macaca mulatta ENSMMUG00000016130 I 0.728
Ptbp2 Mus musculus ENSMUSG00000028134 I 0.728
PTBP2 Ornithorhynchus anatinus ENSOANG00000004656 I 0.728
PTBP2 Canis familiaris ENSCAFG00000020080 I 0.728
PTBP2 Gorilla gorilla ENSGGOG00000000659 I 0.728
PTBP2 Homo sapiens ENSG00000117569 I 0.728
PTBP2 Cavia porcellus ENSCPOG00000003762 I 0.728
ENSPPYG00000001132 Pongo pygmaeus ENSPPYG00000001132 I 0.728
PTBP2 Oryctolagus cuniculus ENSOCUG00000017608 I 0.728
Ptbp2 Rattus norvegicus ENSRNOG00000010827 I 0.728
PTBP2 Tursiops truncatus ENSTTRG00000012904 I 0.728
PTBP2 Tarsius syrichta ENSTSYG00000002576 I 0.728
PTBP2 Pan troglodytes ENSPTRG00000000987 I 0.728
PTBP2 Vicugna pacos ENSVPAG00000002841 I 0.728
Ame_R002925 Ailuropoda melanoleuca Ame_R002925 I 0.728
LOC100057336 Equus caballus ENSECAG00000015783 I 0.725
PTBP2 Monodelphis domestica ENSMODG00000004211 I 0.724
ROD1 Takifugu rubripes ENSTRUG00000007042 I 0.720
PTBP2 Myotis lucifugus ENSMLUG00000002522 I 0.720
PTBP2 Danio rerio ENSDARG00000015901 I 0.716
PTBP2 Oryzias latipes ENSORLG00000013557 I 0.715
ROD1 Tetraodon nigroviridis ENSTNIG00000002790 I 0.713
PTBP2 Gasterosteus aculeatus ENSGACG00000014892 I 0.708
PTBP2 Oryzias latipes ENSORLG00000019191 I 0.701