D4A288_RAT (Rattus norvegicus)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSRNOG00000023845 T41165_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
RBMS1
M143_0.6 		Homo sapiens KAUAUAS RNAcompete
Ray et al.(2013)
RNCMPT00152 		0.803
RBMS3
M164_0.6 		Homo sapiens HAUAUA RNAcompete
Ray et al.(2013)
RNCMPT00173 		0.745
RBMS3
M055_0.6 		Homo sapiens MUAUAKM RNAcompete
Ray et al.(2013)
RNCMPT00057 		0.745
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSRNOP00000038591 RRM 27 92
ENSRNOP00000038591 RRM 106 172

Links

Other RRM family RBPs
Other Rattus norvegicus RBPs

101 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
Rbms2 Rattus norvegicus ENSRNOG00000003076 I 0.891
Rbms2 Mus musculus ENSMUSG00000040043 I 0.876
RBMS2 Loxodonta africana ENSLAFG00000008251 I 0.861
RBMS2 Homo sapiens ENSG00000076067 I 0.861
RBMS2_BOVIN Bos taurus ENSBTAG00000017830 I 0.861
RBMS2 Pan troglodytes ENSPTRG00000005104 I 0.861
RBMS2 Macaca mulatta ENSMMUG00000019330 I 0.861
ENSPPYG00000004665 Pongo pygmaeus ENSPPYG00000004665 I 0.861
RBMS2 Callithrix jacchus ENSCJAG00000010803 I 0.861
RBMS2 Vicugna pacos ENSVPAG00000004022 I 0.854
RBMS2 Pteropus vampyrus ENSPVAG00000007616 I 0.854
RBMS2 Oryctolagus cuniculus ENSOCUG00000006073 I 0.854
RBMS2 Cavia porcellus ENSCPOG00000008256 I 0.854
Rbms2 Dipodomys ordii ENSDORG00000009231 I 0.854
RBMS2 Sus scrofa ENSSSCG00000000402 I 0.854
ENSG00000213250 Homo sapiens ENSG00000213250 I 0.848
Ame_R003849 Ailuropoda melanoleuca Ame_R003849 I 0.847
RBMS2 Canis familiaris ENSCAFG00000000134 I 0.847
RBMS2 Equus caballus ENSECAG00000013470 I 0.839
ENSGGOG00000028247 Gorilla gorilla ENSGGOG00000028247 I 0.839
RBMS2 Danio rerio ENSDARG00000056150 I 0.825
RBMS2 Macropus eugenii ENSMEUG00000015616 I 0.818
RBMS2 Tupaia belangeri ENSTBEG00000009515 I 0.818
RBMS2 Tetraodon nigroviridis ENSTNIG00000015056 I 0.816
rbms2 Xenopus tropicalis ENSXETG00000021787 I 0.810
RBMS2 Anolis carolinensis ENSACAG00000016623 I 0.810
RBMS2 Gasterosteus aculeatus ENSGACG00000009332 I 0.809
RBMS2 Takifugu rubripes ENSTRUG00000006839 I 0.809
A6ML07_CALJA Callithrix jacchus ENSCJAG00000014861 I 0.803
RBMS1 Macaca mulatta ENSMMUG00000016825 I 0.803
Rbms1 Dipodomys ordii ENSDORG00000007103 I 0.803
RBMS1 Gorilla gorilla ENSGGOG00000001264 I 0.803
RBMS1 Pteropus vampyrus ENSPVAG00000010429 I 0.803
RBMS1 Spermophilus tridecemlineatus ENSSTOG00000012501 I 0.803
RBMS1 Homo sapiens ENSG00000153250 D 0.803
RBMS1 Loxodonta africana ENSLAFG00000017217 I 0.803
RBMS1 Canis familiaris ENSCAFG00000009922 I 0.803
RBMS1 Pan troglodytes ENSPTRG00000012573 I 0.803
Ame_R017740 Ailuropoda melanoleuca Ame_R017740 I 0.803
RBMS1 Procavia capensis ENSPCAG00000009673 I 0.803
RBMS1 Tursiops truncatus ENSTTRG00000011058 I 0.803
ENSPPYG00000012879 Pongo pygmaeus ENSPPYG00000012879 I 0.803
RBMS1 Sus scrofa ENSSSCG00000015888 I 0.803
RBMS2 Oryzias latipes ENSORLG00000015426 I 0.803
RBMS1 Tarsius syrichta ENSTSYG00000005584 I 0.803
RBMS1 Oryctolagus cuniculus ENSOCUG00000017365 I 0.803
RBMS1_BOVIN Bos taurus ENSBTAG00000005180 I 0.803
RBMS1 Vicugna pacos ENSVPAG00000002716 I 0.801
RBMS1 Equus caballus ENSECAG00000019894 I 0.801
RBMS2 Oryzias latipes ENSORLG00000007807 I 0.801
RBMS1 Otolemur garnettii ENSOGAG00000002900 I 0.796
O73664_CHICK Gallus gallus ENSGALG00000011132 I 0.796
RBMS1 Monodelphis domestica ENSMODG00000005250 I 0.796
RBMS1 Meleagris gallopavo ENSMGAG00000011054 I 0.796
RBMS2 Gasterosteus aculeatus ENSGACG00000000617 I 0.796
RBMS2 Tetraodon nigroviridis ENSTNIG00000014563 I 0.796
RBMS1 Cavia porcellus ENSCPOG00000012310 I 0.796
RBMS1 Taeniopygia guttata ENSTGUG00000006606 I 0.796
AAH43623 Xenopus laevis AAH43623 I 0.796
Rbms1 Mus musculus ENSMUSG00000026970 I 0.794
RBMS1 Anolis carolinensis ENSACAG00000011984 I 0.790
RBMS1 Ornithorhynchus anatinus ENSOANG00000006166 I 0.790
Rbms1 Rattus norvegicus ENSRNOG00000008482 I 0.788
RBMS1 Danio rerio ENSDARG00000057768 I 0.788
RBMS2 Takifugu rubripes ENSTRUG00000008492 I 0.783
RBMS1 Tetraodon nigroviridis ENSTNIG00000016496 I 0.783
RBMS1 Tupaia belangeri ENSTBEG00000016156 I 0.781
RBMS2 Tursiops truncatus ENSTTRG00000002117 I 0.774
RBMS1 Takifugu rubripes ENSTRUG00000005466 I 0.768
rbms1a Danio rerio ENSDARG00000074023 I 0.759
RBMS1 Oryzias latipes ENSORLG00000016818 I 0.754
RBMS1 Gasterosteus aculeatus ENSGACG00000005671 I 0.754
RBMS3 Oryctolagus cuniculus ENSOCUG00000004840 I 0.750
RBMS3 Ornithorhynchus anatinus ENSOANG00000010529 I 0.750
RBMS3 Ochotona princeps ENSOPRG00000006808 I 0.750
RBMS3 Tursiops truncatus ENSTTRG00000006202 I 0.750
RBMS3 Bos taurus ENSBTAG00000044062 I 0.750
RBMS3 Callithrix jacchus ENSCJAG00000004312 I 0.750
RBMS3 Cavia porcellus ENSCPOG00000006457 I 0.750
RBMS3 Sorex araneus ENSSARG00000000695 I 0.750
RBMS3 Gorilla gorilla ENSGGOG00000007228 I 0.750
RBMS3 Gallus gallus ENSGALG00000011439 I 0.750
RBMS3 Homo sapiens ENSG00000144642 D 0.750
RBMS3 Pan troglodytes ENSPTRG00000014709 I 0.750
RBMS3 Loxodonta africana ENSLAFG00000000354 I 0.750
RBMS3 Macaca mulatta ENSMMUG00000004404 I 0.750
RBMS3 Monodelphis domestica ENSMODG00000015125 I 0.750
Rbms3 Mus musculus ENSMUSG00000039607 I 0.750
RBMS3 Tupaia belangeri ENSTBEG00000005362 I 0.750
RBMS3 Tetraodon nigroviridis ENSTNIG00000013818 I 0.737
rbms3 Danio rerio ENSDARG00000044574 I 0.737
RBMS3 Takifugu rubripes ENSTRUG00000009128 I 0.737
RBMS3 Gasterosteus aculeatus ENSGACG00000006377 I 0.732
RBMS3 Gasterosteus aculeatus ENSGACG00000003155 I 0.732
RBMS3 Oryzias latipes ENSORLG00000005370 I 0.728
RBMS3 Tetraodon nigroviridis ENSTNIG00000013819 I 0.727
RBMS2 Felis catus ENSFCAG00000012028 I 0.715
RBMS2 Myotis lucifugus ENSMLUG00000000530 I 0.706
RBMS3 Sus scrofa ENSSSCG00000011222 I 0.706
ENSGGOG00000011570 Gorilla gorilla ENSGGOG00000011570 I 0.705
RBMS3 Vicugna pacos ENSVPAG00000003842 I 0.703