RBMS3 (Vicugna pacos)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSVPAG00000003842 T42728_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
RBMS3
M164_0.6 		Homo sapiens HAUAUA RNAcompete
Ray et al.(2013)
RNCMPT00173 		0.948
RBMS3
M055_0.6 		Homo sapiens MUAUAKM RNAcompete
Ray et al.(2013)
RNCMPT00057 		0.948
RBMS1
M143_0.6 		Homo sapiens KAUAUAS RNAcompete
Ray et al.(2013)
RNCMPT00152 		0.816
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSVPAP00000003570 RRM 38 102
ENSVPAP00000003570 RRM 115 181

Links

Other RRM family RBPs
Other Vicugna pacos RBPs

107 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
RBMS3 Homo sapiens ENSG00000144642 D 0.948
RBMS3 Cavia porcellus ENSCPOG00000006457 I 0.941
RBMS3 Oryctolagus cuniculus ENSOCUG00000004840 I 0.941
RBMS3 Callithrix jacchus ENSCJAG00000004312 I 0.941
RBMS3 Sorex araneus ENSSARG00000000695 I 0.941
RBMS3 Loxodonta africana ENSLAFG00000000354 I 0.941
RBMS3 Pan troglodytes ENSPTRG00000014709 I 0.941
Rbms3 Mus musculus ENSMUSG00000039607 I 0.941
RBMS3 Gorilla gorilla ENSGGOG00000007228 I 0.941
RBMS3 Ochotona princeps ENSOPRG00000006808 I 0.941
RBMS3 Ornithorhynchus anatinus ENSOANG00000010529 I 0.941
RBMS3 Tupaia belangeri ENSTBEG00000005362 I 0.941
RBMS3 Macaca mulatta ENSMMUG00000004404 I 0.941
RBMS3 Monodelphis domestica ENSMODG00000015125 I 0.941
RBMS3 Bos taurus ENSBTAG00000044062 I 0.941
RBMS3 Tursiops truncatus ENSTTRG00000006202 I 0.933
RBMS3 Gallus gallus ENSGALG00000011439 I 0.933
rbms3 Danio rerio ENSDARG00000044574 I 0.919
RBMS3 Gasterosteus aculeatus ENSGACG00000003155 I 0.919
RBMS3 Tetraodon nigroviridis ENSTNIG00000013818 I 0.919
RBMS3 Oryzias latipes ENSORLG00000005370 I 0.904
RBMS3 Sus scrofa ENSSSCG00000011222 I 0.896
RBMS3 Gasterosteus aculeatus ENSGACG00000006377 I 0.896
RBMS3 Tetraodon nigroviridis ENSTNIG00000013819 I 0.890
RBMS3 Takifugu rubripes ENSTRUG00000009128 I 0.889
RBMS3 Myotis lucifugus ENSMLUG00000000659 I 0.881
RBMS3 Pteropus vampyrus ENSPVAG00000014037 I 0.844
RBMS1 Anolis carolinensis ENSACAG00000011984 I 0.831
RBMS2 Oryzias latipes ENSORLG00000015426 I 0.830
RBMS1 Oryctolagus cuniculus ENSOCUG00000017365 I 0.830
RBMS1 Macaca mulatta ENSMMUG00000016825 I 0.830
RBMS1 Monodelphis domestica ENSMODG00000005250 I 0.830
RBMS1 Procavia capensis ENSPCAG00000009673 I 0.830
RBMS1 Loxodonta africana ENSLAFG00000017217 I 0.830
RBMS1 Otolemur garnettii ENSOGAG00000002900 I 0.830
RBMS1 Gorilla gorilla ENSGGOG00000001264 I 0.830
RBMS1 Equus caballus ENSECAG00000019894 I 0.830
RBMS1_BOVIN Bos taurus ENSBTAG00000005180 I 0.830
RBMS1 Canis familiaris ENSCAFG00000009922 I 0.830
A6ML07_CALJA Callithrix jacchus ENSCJAG00000014861 I 0.830
RBMS1 Tarsius syrichta ENSTSYG00000005584 I 0.830
Ame_R017740 Ailuropoda melanoleuca Ame_R017740 I 0.830
RBMS1 Vicugna pacos ENSVPAG00000002716 I 0.830
RBMS1 Tursiops truncatus ENSTTRG00000011058 I 0.830
RBMS2 Danio rerio ENSDARG00000056150 I 0.830
RBMS1 Sus scrofa ENSSSCG00000015888 I 0.830
RBMS1 Pan troglodytes ENSPTRG00000012573 I 0.830
RBMS1 Homo sapiens ENSG00000153250 D 0.830
Rbms1 Dipodomys ordii ENSDORG00000007103 I 0.830
RBMS1 Pteropus vampyrus ENSPVAG00000010429 I 0.830
RBMS1 Ornithorhynchus anatinus ENSOANG00000006166 I 0.824
RBMS1 Spermophilus tridecemlineatus ENSSTOG00000012501 I 0.822
ENSPPYG00000012879 Pongo pygmaeus ENSPPYG00000012879 I 0.822
RBMS2 Pan troglodytes ENSPTRG00000005104 I 0.822
Rbms1 Rattus norvegicus ENSRNOG00000008482 I 0.822
ENSPPYG00000004665 Pongo pygmaeus ENSPPYG00000004665 I 0.822
RBMS2 Macaca mulatta ENSMMUG00000019330 I 0.822
RBMS2 Loxodonta africana ENSLAFG00000008251 I 0.822
Rbms1 Mus musculus ENSMUSG00000026970 I 0.822
RBMS2 Gasterosteus aculeatus ENSGACG00000009332 I 0.822
RBMS2 Homo sapiens ENSG00000076067 I 0.822
RBMS2 Gasterosteus aculeatus ENSGACG00000000617 I 0.822
rbms2 Xenopus tropicalis ENSXETG00000021787 I 0.822
RBMS1 Cavia porcellus ENSCPOG00000012310 I 0.822
RBMS2 Callithrix jacchus ENSCJAG00000010803 I 0.822
RBMS2 Cavia porcellus ENSCPOG00000008256 I 0.822
RBMS2 Takifugu rubripes ENSTRUG00000008492 I 0.816
RBMS1 Taeniopygia guttata ENSTGUG00000006606 I 0.815
Rbms2 Dipodomys ordii ENSDORG00000009231 I 0.815
RBMS2 Sus scrofa ENSSSCG00000000402 I 0.815
RBMS2 Pteropus vampyrus ENSPVAG00000007616 I 0.815
O73664_CHICK Gallus gallus ENSGALG00000011132 I 0.815
RBMS2 Oryctolagus cuniculus ENSOCUG00000006073 I 0.815
RBMS2 Vicugna pacos ENSVPAG00000004022 I 0.815
RBMS2 Macropus eugenii ENSMEUG00000015616 I 0.815
Rbms2 Mus musculus ENSMUSG00000040043 I 0.815
RBMS1 Meleagris gallopavo ENSMGAG00000011054 I 0.815
RBMS3 Tarsius syrichta ENSTSYG00000002615 I 0.811
ENSG00000213250 Homo sapiens ENSG00000213250 I 0.809
RBMS1 Tupaia belangeri ENSTBEG00000016156 I 0.807
RBMS2_BOVIN Bos taurus ENSBTAG00000017830 I 0.807
RBMS2 Canis familiaris ENSCAFG00000000134 I 0.807
Ame_R003849 Ailuropoda melanoleuca Ame_R003849 I 0.807
RBMS2 Tetraodon nigroviridis ENSTNIG00000015056 I 0.807
Rbms2 Rattus norvegicus ENSRNOG00000003076 I 0.807
RBMS2 Equus caballus ENSECAG00000013470 I 0.801
RBMS2 Tetraodon nigroviridis ENSTNIG00000014563 I 0.801
ENSGGOG00000028247 Gorilla gorilla ENSGGOG00000028247 I 0.800
RBMS2 Takifugu rubripes ENSTRUG00000006839 I 0.800
RBMS2 Oryzias latipes ENSORLG00000007807 I 0.800
rbms1a Danio rerio ENSDARG00000074023 I 0.794
RBMS2 Anolis carolinensis ENSACAG00000016623 I 0.794
AAH43623 Xenopus laevis AAH43623 I 0.793
RBMS1 Danio rerio ENSDARG00000057768 I 0.793
RBMS1 Tetraodon nigroviridis ENSTNIG00000016496 I 0.787
RBMS3 Choloepus hoffmanni ENSCHOG00000000758 I 0.785
RBMS3 Erinaceus europaeus ENSEEUG00000014337 I 0.785
RBMS3 Procavia capensis ENSPCAG00000006307 I 0.780
RBMS3 Dasypus novemcinctus ENSDNOG00000016645 I 0.770
RBMS3 Macropus eugenii ENSMEUG00000004772 I 0.770
RBMS1 Oryzias latipes ENSORLG00000016818 I 0.765
RBMS1 Takifugu rubripes ENSTRUG00000005466 I 0.765
RBMS3 Echinops telfairi ENSETEG00000009485 I 0.763
RBMS2 Tupaia belangeri ENSTBEG00000009515 I 0.759
RBMS1 Gasterosteus aculeatus ENSGACG00000005671 I 0.759
RBMS2 Tursiops truncatus ENSTTRG00000002117 I 0.711
D4A288_RAT Rattus norvegicus ENSRNOG00000023845 I 0.703