ENSSSCG00000015989 (Sus scrofa)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSSSCG00000015989 T41530_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
HNRNPA1
M312_0.6 		Homo sapiens Sequence logo not available UAGGGW RIP-chip
Cook et al.(2011)
560_17925491 		0.801
HNRNPA1
M271_0.6 		Homo sapiens UAGGGW SELEX
Cook et al.(2011)
23_7510636 		0.801
HNRNPA1
M022_0.6 		Homo sapiens DUAGGGW RNAcompete
Ray et al.(2013)
RNCMPT00022 		0.801
HNRNPA1L2
M023_0.6 		Homo sapiens DUAGGGW RNAcompete
Ray et al.(2013)
RNCMPT00023 		0.787
HNRNPA2B1
M024_0.6 		Homo sapiens DUAGGGW RNAcompete
Ray et al.(2013)
RNCMPT00024 		0.716
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSSSCP00000016941 RRM 37 106
ENSSSCP00000016941 RRM 128 194

Links

Other RRM family RBPs
Other Sus scrofa RBPs

200 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
HNRNPA3 Loxodonta africana ENSLAFG00000027712 I 0.934
ENSPPYG00000012967 Pongo pygmaeus ENSPPYG00000012967 I 0.927
ENSDORG00000011155 Dipodomys ordii ENSDORG00000011155 I 0.920
D3ZX95_RAT Rattus norvegicus ENSRNOG00000027006 I 0.907
D3ZTB7_RAT Rattus norvegicus ENSRNOG00000031608 I 0.905
HNRNPA3 Monodelphis domestica ENSMODG00000019803 I 0.901
ENSCPOG00000004251 Cavia porcellus ENSCPOG00000004251 I 0.901
HNRNPA3 Pteropus vampyrus ENSPVAG00000010380 I 0.901
ENSMMUG00000001858 Macaca mulatta ENSMMUG00000001858 I 0.901
HNRNPA3 Oryctolagus cuniculus ENSOCUG00000002743 I 0.901
HNRNPA3 Cavia porcellus ENSCPOG00000011301 I 0.901
Hnrnpa3 Mus musculus ENSMUSG00000059005 I 0.901
LOC781499 Bos taurus ENSBTAG00000021580 I 0.901
HNRNPA3 Pan troglodytes ENSPTRG00000012676 I 0.901
HNRNPA3 Homo sapiens ENSG00000170144 I 0.901
HNRNPA3 Dasypus novemcinctus ENSDNOG00000019022 I 0.901
LOC100360986 Rattus norvegicus ENSRNOG00000001556 I 0.901
HNRNPA3 Myotis lucifugus ENSMLUG00000003906 I 0.901
HNRNPA3 Gorilla gorilla ENSGGOG00000006130 I 0.901
LOC100411573 Callithrix jacchus ENSCJAG00000023383 I 0.901
HNRNPA3 Sus scrofa ENSSSCG00000015988 I 0.901
HNRNPA3 Tursiops truncatus ENSTTRG00000014225 I 0.901
HNRNPA3 Macropus eugenii ENSMEUG00000013622 I 0.901
ENSCAFG00000013497 Canis familiaris ENSCAFG00000013497 I 0.901
ROA3_RAT Rattus norvegicus ENSRNOG00000027001 I 0.901
LOC100066794 Equus caballus ENSECAG00000023237 I 0.894
HNRNPA3 Anolis carolinensis ENSACAG00000012234 I 0.894
HNRNPA3 Felis catus ENSFCAG00000012146 I 0.894
HNRPA3 Gallus gallus ENSGALG00000009250 I 0.887
Gm8991 Mus musculus ENSMUSG00000059179 I 0.887
HNRNPA3 Taeniopygia guttata ENSTGUG00000008996 I 0.887
HNRNPA3 Meleagris gallopavo ENSMGAG00000009565 I 0.887
ENSCJAG00000006928 Callithrix jacchus ENSCJAG00000006928 I 0.886
D3ZXA3_RAT Rattus norvegicus ENSRNOG00000038905 I 0.879
ENSPPYG00000001012 Pongo pygmaeus ENSPPYG00000001012 I 0.859
ENSCJAG00000008584 Callithrix jacchus ENSCJAG00000008584 I 0.859
ENSRNOG00000013650 Rattus norvegicus ENSRNOG00000013650 I 0.859
hnrnpa3 Xenopus tropicalis ENSXETG00000001806 I 0.858
AAA49949 Xenopus laevis AAA49949 I 0.851
P51968 Xenopus laevis P51968 I 0.851
AAA49950 Xenopus laevis AAA49950 I 0.846
AAI69881 Xenopus laevis AAI69881 I 0.846
D3ZNE1_RAT Rattus norvegicus ENSRNOG00000005671 I 0.846
P51992 Xenopus laevis P51992 I 0.846
CBF67578 Xenopus laevis CBF67578 I 0.846
CBU92451 Xenopus laevis CBU92451 I 0.846
HNRNPA3 Sorex araneus ENSSARG00000007605 I 0.830
Hnrnpa1 Dipodomys ordii ENSDORG00000010628 I 0.818
ENSSARG00000008946 Sorex araneus ENSSARG00000008946 I 0.818
ENSRNOG00000030901 Rattus norvegicus ENSRNOG00000030901 I 0.809
ENSACAG00000007169 Anolis carolinensis ENSACAG00000007169 I 0.809
ENSLAFG00000029587 Loxodonta africana ENSLAFG00000029587 I 0.809
ENSGGOG00000022020 Gorilla gorilla ENSGGOG00000022020 I 0.809
Ame_R015370 Ailuropoda melanoleuca Ame_R015370 I 0.808
HNRNPA3 Microcebus murinus ENSMICG00000005513 I 0.804
Q6DTK6_HORSE Equus caballus ENSECAG00000008676 I 0.801
HNRNPA1 Homo sapiens ENSG00000135486 D 0.801
ENSDNOG00000009228 Dasypus novemcinctus ENSDNOG00000009228 I 0.801
ENSCJAG00000033856 Callithrix jacchus ENSCJAG00000033856 I 0.801
ENSOCUG00000023674 Oryctolagus cuniculus ENSOCUG00000023674 I 0.801
ROA1_PANTR Pan troglodytes ENSPTRG00000031363 I 0.801
ROA1_PANTR Pan troglodytes ENSPTRG00000028756 I 0.801
HNRNPA1L2 Pan troglodytes ENSPTRG00000032520 I 0.801
ENSPVAG00000000322 Pteropus vampyrus ENSPVAG00000000322 I 0.801
ENSSSCG00000000288 Sus scrofa ENSSSCG00000000288 I 0.801
Hnrnpa1 Rattus norvegicus ENSRNOG00000036839 I 0.801
ROA1_PANTR Pan troglodytes ENSPTRG00000005035 I 0.801
ENSCJAG00000019479 Callithrix jacchus ENSCJAG00000019479 I 0.801
ENSMLUG00000000648 Myotis lucifugus ENSMLUG00000000648 I 0.801
HNRNPA1 Gorilla gorilla ENSGGOG00000003040 I 0.801
LOC710473 Macaca mulatta ENSMMUG00000007887 I 0.801
LOC710473 Macaca mulatta ENSMMUG00000012989 I 0.801
ENSOCUG00000013350 Oryctolagus cuniculus ENSOCUG00000013350 I 0.801
Hnrnpa1 Mus musculus ENSMUSG00000046434 I 0.801
ENSG00000215492 Homo sapiens ENSG00000215492 I 0.801
ENSFCAG00000010150 Felis catus ENSFCAG00000010150 I 0.801
ROA1_BOVIN Bos taurus ENSBTAG00000001553 I 0.801
LOC100397230 Callithrix jacchus ENSCJAG00000018864 I 0.801
XM_534786.2 Canis familiaris ENSCAFG00000006580 I 0.801
Ame_R011792 Ailuropoda melanoleuca Ame_R011792 I 0.801
ENSTBEG00000008238 Tupaia belangeri ENSTBEG00000008238 I 0.801
ENSTTRG00000004505 Tursiops truncatus ENSTTRG00000004505 I 0.801
ENSOCUG00000010985 Oryctolagus cuniculus ENSOCUG00000010985 I 0.794
LOC710473 Macaca mulatta ENSMMUG00000029402 I 0.794
ENSOCUG00000022568 Oryctolagus cuniculus ENSOCUG00000022568 I 0.794
ENSOCUG00000023444 Oryctolagus cuniculus ENSOCUG00000023444 I 0.794
ENSOPRG00000006107 Ochotona princeps ENSOPRG00000006107 I 0.794
ENSPTRG00000018253 Pan troglodytes ENSPTRG00000018253 I 0.794
ENSGGOG00000025446 Gorilla gorilla ENSGGOG00000025446 I 0.794
LOC100397230 Callithrix jacchus ENSCJAG00000004031 I 0.794
ENSMGAG00000007630 Meleagris gallopavo ENSMGAG00000007630 I 0.789
ENSLAFG00000026657 Loxodonta africana ENSLAFG00000026657 I 0.787
ENSLAFG00000030769 Loxodonta africana ENSLAFG00000030769 I 0.787
ENSGGOG00000025381 Gorilla gorilla ENSGGOG00000025381 I 0.787
ENSOCUG00000021006 Oryctolagus cuniculus ENSOCUG00000021006 I 0.787
ENSOCUG00000023322 Oryctolagus cuniculus ENSOCUG00000023322 I 0.787
ENSOCUG00000028124 Oryctolagus cuniculus ENSOCUG00000028124 I 0.787
ENSOCUG00000021007 Oryctolagus cuniculus ENSOCUG00000021007 I 0.787
HNRNPA1L2 Homo sapiens ENSG00000139675 D 0.787
ENSCAFG00000010153 Canis familiaris ENSCAFG00000010153 I 0.787
ENSMLUG00000003232 Myotis lucifugus ENSMLUG00000003232 I 0.787
ENSMUSG00000021927 Mus musculus ENSMUSG00000021927 I 0.787
ENSEEUG00000006130 Erinaceus europaeus ENSEEUG00000006130 I 0.787
LOC710473 Macaca mulatta ENSMMUG00000007928 I 0.780
LOC100409067 Callithrix jacchus ENSCJAG00000003245 I 0.780
LOC100410389 Callithrix jacchus ENSCJAG00000023392 I 0.780
LOC100413454 Callithrix jacchus ENSCJAG00000009030 I 0.780
hnrnpa1 Xenopus tropicalis ENSXETG00000021277 I 0.780
XM_854536.1 Canis familiaris ENSCAFG00000005046 I 0.780
ENSOGAG00000009945 Otolemur garnettii ENSOGAG00000009945 I 0.780
ROA1_MACMU Macaca mulatta ENSMMUG00000031613 I 0.780
ENSCPOG00000021077 Cavia porcellus ENSCPOG00000021077 I 0.780
ENSPPYG00000016683 Pongo pygmaeus ENSPPYG00000016683 I 0.780
CBF67672 Xenopus laevis CBF67672 I 0.773
AAH72090 Xenopus laevis AAH72090 I 0.773
CBF67555 Xenopus laevis CBF67555 I 0.773
CBU92546 Xenopus laevis CBU92546 I 0.773
hnrnpa3 Danio rerio ENSDARG00000059351 I 0.773
ENSOCUG00000022668 Oryctolagus cuniculus ENSOCUG00000022668 I 0.773
P17130 Xenopus laevis P17130 I 0.773
AAA49742 Xenopus laevis AAA49742 I 0.773
ENSCJAG00000031552 Callithrix jacchus ENSCJAG00000031552 I 0.773
CBU92428 Xenopus laevis CBU92428 I 0.773
AAH45260 Xenopus laevis AAH45260 I 0.773
ENSGACG00000009435 Gasterosteus aculeatus ENSGACG00000009435 I 0.773
D4A2D2_RAT Rattus norvegicus ENSRNOG00000021986 I 0.773
XM_852631.1 Canis familiaris ENSCAFG00000023680 I 0.773
AAA49741 Xenopus laevis AAA49741 I 0.773
ENSRNOG00000039436 Rattus norvegicus ENSRNOG00000039436 I 0.766
D4A491_RAT Rattus norvegicus ENSRNOG00000029531 I 0.766
ENSPPYG00000017853 Pongo pygmaeus ENSPPYG00000017853 I 0.766
ENSEEUG00000000494 Erinaceus europaeus ENSEEUG00000000494 I 0.766
ENSORLG00000008001 Oryzias latipes ENSORLG00000008001 I 0.766
ENSCAFG00000006784 Canis familiaris ENSCAFG00000006784 I 0.766
ENSCJAG00000009723 Callithrix jacchus ENSCJAG00000009723 I 0.764
LOC785445 Bos taurus ENSBTAG00000025621 I 0.761
ENSTNIG00000015047 Tetraodon nigroviridis ENSTNIG00000015047 I 0.759
XM_855847.1 Canis familiaris ENSCAFG00000006327 I 0.759
Q1KKU4_FUGRU Takifugu rubripes ENSTRUG00000002190 I 0.759
ENSRNOG00000005951 Rattus norvegicus ENSRNOG00000005951 I 0.759
ENSTBEG00000016272 Tupaia belangeri ENSTBEG00000016272 I 0.754
D4A6Z0_RAT Rattus norvegicus ENSRNOG00000042924 N 0.750
ENSRNOG00000033182 Rattus norvegicus ENSRNOG00000033182 I 0.748
ENSCJAG00000004902 Callithrix jacchus ENSCJAG00000004902 I 0.746
ENSMMUG00000007695 Macaca mulatta ENSMMUG00000007695 I 0.746
D3ZK54_RAT Rattus norvegicus ENSRNOG00000025482 I 0.745
ENSCJAG00000035202 Callithrix jacchus ENSCJAG00000035202 I 0.745
ENSCJAG00000032417 Callithrix jacchus ENSCJAG00000032417 I 0.745
HNRNPA3 Tetraodon nigroviridis ENSTNIG00000016958 I 0.745
Q1KKS6_FUGRU Takifugu rubripes ENSTRUG00000017504 I 0.741
HNRNPA3 Oryzias latipes ENSORLG00000017561 I 0.741
ENSCAFG00000015319 Canis familiaris ENSCAFG00000015319 I 0.741
ENSCJAG00000010169 Callithrix jacchus ENSCJAG00000010169 I 0.739
XP_541811.1 Canis familiaris ENSCAFG00000006586 I 0.739
ENSOCUG00000022627 Oryctolagus cuniculus ENSOCUG00000022627 I 0.739
ENSCJAG00000000095 Callithrix jacchus ENSCJAG00000000095 I 0.739
ENSTTRG00000015563 Tursiops truncatus ENSTTRG00000015563 I 0.735
ENSCAFG00000011035 Canis familiaris ENSCAFG00000011035 I 0.734
ENSETEG00000015332 Echinops telfairi ENSETEG00000015332 I 0.732
LOC100397230 Callithrix jacchus ENSCJAG00000014791 I 0.732
ENSMMUG00000031948 Macaca mulatta ENSMMUG00000031948 I 0.732
HNRNPA3 Gasterosteus aculeatus ENSGACG00000004477 I 0.727
ENSCJAG00000001353 Callithrix jacchus ENSCJAG00000001353 I 0.727
D4AD23_RAT Rattus norvegicus ENSRNOG00000025891 I 0.725
ENSTBEG00000012511 Tupaia belangeri ENSTBEG00000012511 I 0.725
ENSRNOG00000011100 Rattus norvegicus ENSRNOG00000011100 I 0.725
ENSCJAG00000001737 Callithrix jacchus ENSCJAG00000001737 I 0.725
ENSCJAG00000016375 Callithrix jacchus ENSCJAG00000016375 I 0.725
ENSPPYG00000001326 Pongo pygmaeus ENSPPYG00000001326 I 0.725
hnrnpa1 Danio rerio ENSDARG00000036675 I 0.723
ENSCAFG00000019118 Canis familiaris ENSCAFG00000019118 I 0.722
ENSCAFG00000020238 Canis familiaris ENSCAFG00000020238 I 0.720
ENSMLUG00000000788 Myotis lucifugus ENSMLUG00000000788 I 0.720
XP_848548.1 Canis familiaris ENSCAFG00000016313 I 0.718
ENSCAFG00000005207 Canis familiaris ENSCAFG00000005207 I 0.718
D4A8U2_RAT Rattus norvegicus ENSRNOG00000007252 I 0.716
ENSCJAG00000005326 Callithrix jacchus ENSCJAG00000005326 I 0.715
ENSCAFG00000004202 Canis familiaris ENSCAFG00000004202 I 0.713
LOC100054206 Equus caballus ENSECAG00000006699 I 0.713
ENSSTOG00000015259 Spermophilus tridecemlineatus ENSSTOG00000015259 I 0.711
ENSCAFG00000014094 Canis familiaris ENSCAFG00000014094 I 0.711
ENSCJAG00000007250 Callithrix jacchus ENSCJAG00000007250 I 0.711
ENSCJAG00000020672 Callithrix jacchus ENSCJAG00000020672 I 0.711
ENSGGOG00000025827 Gorilla gorilla ENSGGOG00000025827 I 0.711
ENSRNOG00000021280 Rattus norvegicus ENSRNOG00000021280 I 0.711
ENSCAFG00000002059 Canis familiaris ENSCAFG00000002059 I 0.711
ENSRNOG00000042377 Rattus norvegicus ENSRNOG00000042377 I 0.711
ENSOCUG00000006431 Oryctolagus cuniculus ENSOCUG00000006431 I 0.709
ENSRNOG00000030250 Rattus norvegicus ENSRNOG00000030250 I 0.709
ENSCAFG00000007879 Canis familiaris ENSCAFG00000007879 I 0.708
ENSCAFG00000024951 Canis familiaris ENSCAFG00000024951 I 0.708
ENSRNOG00000043173 Rattus norvegicus ENSRNOG00000043173 I 0.707
ENSCAFG00000019104 Canis familiaris ENSCAFG00000019104 I 0.706
ENSMODG00000024570 Monodelphis domestica ENSMODG00000024570 I 0.705
ENSRNOG00000033211 Rattus norvegicus ENSRNOG00000033211 I 0.705
ENSCJAG00000017130 Callithrix jacchus ENSCJAG00000017130 I 0.704
ENSGGOG00000027879 Gorilla gorilla ENSGGOG00000027879 I 0.704
ENSCAFG00000025274 Canis familiaris ENSCAFG00000025274 I 0.704
ENSCAFG00000017316 Canis familiaris ENSCAFG00000017316 I 0.703
D3ZB98_RAT Rattus norvegicus ENSRNOG00000029641 I 0.702