estExt_fgenesh1_pg.C_2760028 (Capitella teleta)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 estExt_fgenesh1_pg.C_2760028 T50555_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
estExt_fgenesh1_pg.C_2760028 RRM 21 88

Links

Other RRM family RBPs
Other Capitella teleta RBPs

141 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
estExt_fgenesh2_kg.C_sca_670005 Lottia gigantea estExt_fgenesh2_kg.C_sca_670005 N 0.897
DGIL_AUG5s10565g5t1 Acyrtosiphon pisum DGIL_AUG5s10565g5t1 N 0.897
PHUM617060 Pediculus humanus PHUM617060 N 0.897
amel4_ncbi_hmm5835 Tribolium castaneum amel4_ncbi_hmm5835 N 0.882
amel4_ncbi_hmm5835 Apis mellifera amel4_ncbi_hmm5835 N 0.882
ENSCING00000012689 Ciona intestinalis ENSCING00000012689 N 0.882
ENSCSAVG00000008970 Ciona savignyi ENSCSAVG00000008970 N 0.882
nasonia_NCBI_hmm146063 Nasonia vitripennis nasonia_NCBI_hmm146063 N 0.882
estExt_GenewiseH_1.C_6800062 Branchiostoma floridae estExt_GenewiseH_1.C_6800062 N 0.882
nasonia_NCBI_hmm648054 Nasonia vitripennis nasonia_NCBI_hmm648054 N 0.882
68671 Helobdella robusta 68671 N 0.882
estExt_fgenesh1_kg.C_20004 Daphnia pulex estExt_fgenesh1_kg.C_20004 N 0.870
AAEL005909 Aedes aegypti AAEL005909 N 0.868
CpipJ_CPIJ008576 Culex pipiens CpipJ_CPIJ008576 N 0.868
CPIJ008576 Culex quinquefasciatus CPIJ008576 N 0.868
estExt_fgenesh1_pg.C_1580052 Nematostella vectensis estExt_fgenesh1_pg.C_1580052 N 0.868
ISCW024082 Ixodes scapularis ISCW024082 N 0.868
ENSDNOG00000007148 Dasypus novemcinctus ENSDNOG00000007148 N 0.853
0610009D07Rik Dipodomys ordii ENSDORG00000009772 N 0.853
LOC100056247 Equus caballus ENSECAG00000015618 N 0.853
AGAP002780 Anopheles gambiae AGAP002780 N 0.853
ENSCPOG00000008016 Cavia porcellus ENSCPOG00000008016 N 0.853
ENSCHOG00000000689 Choloepus hoffmanni ENSCHOG00000000689 N 0.853
XM_532889.2 Canis familiaris ENSCAFG00000003957 N 0.853
ENSACAG00000011677 Anolis carolinensis ENSACAG00000011677 N 0.853
ENSFCAG00000004304 Felis catus ENSFCAG00000004304 N 0.853
LOC100386467 Callithrix jacchus ENSCJAG00000007716 N 0.853
Q2KIQ7_BOVIN Bos taurus ENSBTAG00000003407 N 0.853
ENSMGAG00000014057 Meleagris gallopavo ENSMGAG00000014057 N 0.853
SF3B14 Taeniopygia guttata ENSTGUG00000013191 N 0.853
ENSTBEG00000012532 Tupaia belangeri ENSTBEG00000012532 N 0.853
ENSSSCG00000008587 Sus scrofa ENSSSCG00000008587 N 0.853
ENSSARG00000011902 Sorex araneus ENSSARG00000011902 N 0.853
ENSTNIG00000009719 Tetraodon nigroviridis ENSTNIG00000009719 N 0.853
ENSTRUG00000006551 Takifugu rubripes ENSTRUG00000006551 N 0.853
ENSVPAG00000005546 Vicugna pacos ENSVPAG00000005546 N 0.853
ENSTTRG00000013430 Tursiops truncatus ENSTTRG00000013430 N 0.853
ENSTSYG00000013978 Tarsius syrichta ENSTSYG00000013978 N 0.853
ENSPVAG00000011346 Pteropus vampyrus ENSPVAG00000011346 N 0.853
XM_515324.2 Pan troglodytes ENSPTRG00000011709 N 0.853
ENSMLUG00000002473 Myotis lucifugus ENSMLUG00000002473 N 0.853
ENSLAFG00000029423 Loxodonta africana ENSLAFG00000029423 N 0.853
SF3B14 Gallus gallus ENSGALG00000016501 N 0.853
XM_001098393.1 Macaca mulatta ENSMMUG00000001282 N 0.853
0610009D07Rik Mus musculus ENSMUSG00000037361 N 0.853
ENSPPYG00000012603 Pongo pygmaeus ENSPPYG00000012603 N 0.853
ENSOCUG00000022008 Oryctolagus cuniculus ENSOCUG00000022008 N 0.853
ENSOANG00000007627 Ornithorhynchus anatinus ENSOANG00000007627 N 0.853
AC008073.5 Homo sapiens ENSG00000115128 N 0.853
sf3b14 Danio rerio ENSDARG00000009753 N 0.853
Sjc_0071370 Schistosoma japonicum Sjc_0071370 N 0.853
Ame_R001592 Ailuropoda melanoleuca Ame_R001592 N 0.853
Smp_032060 Schistosoma mansoni Smp_032060 N 0.853
GJ12004 Drosophila virilis FBgn0199256 N 0.841
GH16287 Drosophila grimshawi FBgn0123758 N 0.841
GI13232 Drosophila mojavensis FBgn0135989 N 0.841
GD13137 Drosophila simulans FBgn0184859 N 0.841
GM13852 Drosophila sechellia FBgn0168783 N 0.841
GL22529 Drosophila persimilis FBgn0160121 N 0.841
GG14070 Drosophila erecta FBgn0106332 N 0.841
GF10910 Drosophila ananassae FBgn0087950 N 0.841
GK17258 Drosophila willistoni FBgn0219257 N 0.841
CG13298 Drosophila melanogaster FBgn0035692 N 0.841
fgeneshTA2_pm.C_scaffold_21000029 Trichoplax adhaerens fgeneshTA2_pm.C_scaffold_21000029 N 0.841
GE20495 Drosophila yakuba FBgn0068445 N 0.841
GA12181-RA Drosophila pseudoobscura FBgn0072229 N 0.841
ENSGACG00000004803 Gasterosteus aculeatus ENSGACG00000004803 N 0.838
sf3b14 Xenopus tropicalis ENSXETG00000018204 N 0.838
LOAG_04189 Loa loa LOAG_04189 N 0.826
Minc01156 Meloidogyne incognita Minc01156 N 0.824
XM_001364269.1 Monodelphis domestica ENSMODG00000002144 N 0.824
AAH57709 Xenopus laevis AAH57709 N 0.824
ENSORLG00000015955 Oryzias latipes ENSORLG00000015955 N 0.824
e_gw1.13.49.1 Emiliania huxleyi e_gw1.13.49.1 N 0.812
estExt_fgenesh2_pg.C_240194 Selaginella moellendorfii estExt_fgenesh2_pg.C_240194 N 0.809
LOC_Os03g59710 Oryza sativa LOC_Os03g59710 N 0.794
XP_002160322.1 Hydra magnipapillata XP_002160322.1 N 0.794
BGIOSIBCE013412 Oryza indica BGIOSIBCE013412 N 0.794
CJA01433 Caenorhabditis japonica CJA01433 N 0.794
PPA24922 Pristionchus pacificus PPA24922 N 0.794
XM_002873508.1 Arabidopsis lyrata scaffold_601250.1 N 0.783
mgf016428m Mimulus guttatus mgf016428m N 0.783
AT5G12190 Arabidopsis thaliana AT5G12190-TAIR-G N 0.783
GRMZM2G358416 Zea mays GRMZM2G358416 N 0.779
GRMZM2G107745 Zea mays GRMZM2G107745 N 0.779
C50D2.5 Caenorhabditis elegans C50D2.5 N 0.779
CBG06987 Caenorhabditis briggsae CBG06987 N 0.779
SPRG_00106 Saprolegnia parasitica SPRG_00106 N 0.779
SB01G003790 Sorghum bicolor Sb01g003790 N 0.779
TA13725 Theileria annulata TA13725 N 0.779
ENSCHOG00000013886 Choloepus hoffmanni ENSCHOG00000013886 N 0.779
estExt_Genewise1.C_630098 Physcomitrella patens estExt_Genewise1.C_630098 N 0.779
CRE22109 Caenorhabditis remanei CRE22109 N 0.779
Aqu1.214150 Amphimedon queenslandica Aqu1.214150 N 0.779
CBN08400 Caenorhabditis brenneri CBN08400 N 0.779
Glyma02g44710.1 Glycine max Glyma02g44710.1 N 0.768
Medtr5g096400 Medicago truncatula Medtr5g096400 N 0.768
chr2.CM0308.280.nc Lotus japonicus chr2.CM0308.280.nc N 0.768
ppa013407m Prunus persica ppa013407m N 0.765
MDP0000185506 Malus x domestica MDP0000185506 N 0.765
PK21780.1 Cannabis sativa PK21780.1 N 0.765
B9GG60_POPTR Populus trichocarpa POPTR_0001s28000 N 0.765
GSVIVG00037329001 Vitis vinifera GSVIVG00037329001 N 0.765
SNAPOd2T00023714001 Oikopleura dioica SNAPOd2T00023714001 N 0.765
29868.m000351 Ricinus communis 29868.m000351 N 0.765
Glyma14g04020.1 Glycine max Glyma14g04020.1 N 0.765
cassava30358.valid.m1 Manihot esculenta cassava30358.valid.m1 N 0.765
BRADI1G04240 Brachypodium distachyon BRADI1G04240 N 0.765
ppa013405m Prunus persica ppa013405m N 0.765
Cucsa.086930 Cucumis sativus Cucsa.086930 N 0.754
s_454910 Phytophthora sojae s_454910 N 0.754
estExt_fgenesh1_pg.C_130126 Phytophthora capsici estExt_fgenesh1_pg.C_130126 N 0.754
PITG_10282 Phytophthora infestans PITG_10282 N 0.754
TP02_0539 Theileria parva TP02_0539 N 0.750
B9HNI9_POPTR Populus trichocarpa POPTR_0009s07180 N 0.750
GSPATP00004048001 Paramecium tetraurelia GSPATP00004048001 N 0.750
estExt_Genewise1Plus.C_10695 Chlorella NC64A estExt_Genewise1Plus.C_10695 N 0.750
THAPSDRAFT_20086 Thalassiosira pseudonana Thaps20086 N 0.739
PHATR_8132 Phaeodactylum tricornutum Phatr8132 N 0.739
PCHAS_144180 Plasmodium chabaudi PCHAS_144180 N 0.739
fgenesh1_pm.C_scaffold_108000003 Phytophthora ramorum fgenesh1_pm.C_scaffold_108000003 N 0.739
e_gw1.17.197.1 Volvox carteri e_gw1.17.197.1 N 0.735
DDB_G0286297 Dictyostelium discoideum DDB_G0286297 N 0.735
PKH_144160 Plasmodium knowlesi PKH_144160 N 0.735
EDO06533.1 Babesia bovis EDO06533.1 N 0.735
PVX_123875 Plasmodium vivax PVX_123875 N 0.735
GSPATP00010032001 Paramecium tetraurelia GSPATP00010032001 N 0.735
PFL1200c Plasmodium falciparum PFL1200c N 0.735
estExt_fgeneshPB_pg.C_50297 Phycomyces blakesleeanus estExt_fgeneshPB_pg.C_50297 N 0.725
PBANKA_143980 Plasmodium berghei PBANKA_143980 N 0.725
MDP0000916880 Malus x domestica MDP0000916880 N 0.721
GP3.080340 Batrachochytrium dendrobatidis GP3.080340 N 0.710
fgeneshMC_pg.3_#_621 Mucor circinelloides fgeneshMC_pg.3_#_621 N 0.710
SPPG_04286 Spizellomyces punctatus SPPG_04286 N 0.710
RO3G_04631 Rhizopus oryzae RO3G_04631 N 0.710
estExt_fgeneshCV_pm.C_140033 Chlorella vulgaris estExt_fgeneshCV_pm.C_140033 N 0.706
PY07239 Plasmodium yoelii PY07239 N 0.706
estExt_Genewise1Plus.C_10491 Micromonas pusilla estExt_Genewise1Plus.C_10491 N 0.706
estExt_Genemark1.C_140122 Coccomyxa C 169 estExt_Genemark1.C_140122 N 0.706
e_gw1.11.964.1 Ostreococcus RCC809 e_gw1.11.964.1 N 0.706
32497 Aureococcus anophagefferens 32497 N 0.703