estExt_fgenesh2_kg.C_sca_670005 (Lottia gigantea)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 estExt_fgenesh2_kg.C_sca_670005 T50766_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
estExt_fgenesh2_kg.C_sca_670005 RRM 19 86

Links

Other RRM family RBPs
Other Lottia gigantea RBPs

135 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
68671 Helobdella robusta 68671 N 0.971
amel4_ncbi_hmm5835 Apis mellifera amel4_ncbi_hmm5835 N 0.941
nasonia_NCBI_hmm146063 Nasonia vitripennis nasonia_NCBI_hmm146063 N 0.941
nasonia_NCBI_hmm648054 Nasonia vitripennis nasonia_NCBI_hmm648054 N 0.941
DGIL_AUG5s10565g5t1 Acyrtosiphon pisum DGIL_AUG5s10565g5t1 N 0.941
amel4_ncbi_hmm5835 Tribolium castaneum amel4_ncbi_hmm5835 N 0.941
ENSDNOG00000007148 Dasypus novemcinctus ENSDNOG00000007148 N 0.926
0610009D07Rik Dipodomys ordii ENSDORG00000009772 N 0.926
AC008073.5 Homo sapiens ENSG00000115128 N 0.926
sf3b14 Danio rerio ENSDARG00000009753 N 0.926
ENSFCAG00000004304 Felis catus ENSFCAG00000004304 N 0.926
XM_532889.2 Canis familiaris ENSCAFG00000003957 N 0.926
Q2KIQ7_BOVIN Bos taurus ENSBTAG00000003407 N 0.926
ENSACAG00000011677 Anolis carolinensis ENSACAG00000011677 N 0.926
SF3B14 Gallus gallus ENSGALG00000016501 N 0.926
ENSCHOG00000000689 Choloepus hoffmanni ENSCHOG00000000689 N 0.926
LOC100386467 Callithrix jacchus ENSCJAG00000007716 N 0.926
ENSCPOG00000008016 Cavia porcellus ENSCPOG00000008016 N 0.926
ENSMGAG00000014057 Meleagris gallopavo ENSMGAG00000014057 N 0.926
ENSTBEG00000012532 Tupaia belangeri ENSTBEG00000012532 N 0.926
ENSSSCG00000008587 Sus scrofa ENSSSCG00000008587 N 0.926
ENSSARG00000011902 Sorex araneus ENSSARG00000011902 N 0.926
SF3B14 Taeniopygia guttata ENSTGUG00000013191 N 0.926
ENSTSYG00000013978 Tarsius syrichta ENSTSYG00000013978 N 0.926
ENSVPAG00000005546 Vicugna pacos ENSVPAG00000005546 N 0.926
ENSTTRG00000013430 Tursiops truncatus ENSTTRG00000013430 N 0.926
ENSPVAG00000011346 Pteropus vampyrus ENSPVAG00000011346 N 0.926
XM_515324.2 Pan troglodytes ENSPTRG00000011709 N 0.926
XM_001098393.1 Macaca mulatta ENSMMUG00000001282 N 0.926
ENSMLUG00000002473 Myotis lucifugus ENSMLUG00000002473 N 0.926
0610009D07Rik Mus musculus ENSMUSG00000037361 N 0.926
ENSOANG00000007627 Ornithorhynchus anatinus ENSOANG00000007627 N 0.926
ENSPPYG00000012603 Pongo pygmaeus ENSPPYG00000012603 N 0.926
ENSOCUG00000022008 Oryctolagus cuniculus ENSOCUG00000022008 N 0.926
ENSLAFG00000029423 Loxodonta africana ENSLAFG00000029423 N 0.926
LOC100056247 Equus caballus ENSECAG00000015618 N 0.926
estExt_GenewiseH_1.C_6800062 Branchiostoma floridae estExt_GenewiseH_1.C_6800062 N 0.926
Ame_R001592 Ailuropoda melanoleuca Ame_R001592 N 0.926
Smp_032060 Schistosoma mansoni Smp_032060 N 0.912
sf3b14 Xenopus tropicalis ENSXETG00000018204 N 0.912
ISCW024082 Ixodes scapularis ISCW024082 N 0.912
CPIJ008576 Culex quinquefasciatus CPIJ008576 N 0.912
Sjc_0071370 Schistosoma japonicum Sjc_0071370 N 0.912
PHUM617060 Pediculus humanus PHUM617060 N 0.912
CpipJ_CPIJ008576 Culex pipiens CpipJ_CPIJ008576 N 0.912
AAEL005909 Aedes aegypti AAEL005909 N 0.912
AGAP002780 Anopheles gambiae AGAP002780 N 0.897
estExt_fgenesh1_pg.C_2760028 Capitella teleta estExt_fgenesh1_pg.C_2760028 N 0.897
ENSTNIG00000009719 Tetraodon nigroviridis ENSTNIG00000009719 N 0.897
XM_001364269.1 Monodelphis domestica ENSMODG00000002144 N 0.897
estExt_fgenesh1_pg.C_1580052 Nematostella vectensis estExt_fgenesh1_pg.C_1580052 N 0.897
ENSORLG00000015955 Oryzias latipes ENSORLG00000015955 N 0.897
ENSTRUG00000006551 Takifugu rubripes ENSTRUG00000006551 N 0.897
AAH57709 Xenopus laevis AAH57709 N 0.897
estExt_fgenesh1_kg.C_20004 Daphnia pulex estExt_fgenesh1_kg.C_20004 N 0.884
ENSGACG00000004803 Gasterosteus aculeatus ENSGACG00000004803 N 0.882
ENSCING00000012689 Ciona intestinalis ENSCING00000012689 N 0.882
ENSCSAVG00000008970 Ciona savignyi ENSCSAVG00000008970 N 0.882
Minc01156 Meloidogyne incognita Minc01156 N 0.882
PPA24922 Pristionchus pacificus PPA24922 N 0.882
GK17258 Drosophila willistoni FBgn0219257 N 0.855
GA12181-RA Drosophila pseudoobscura FBgn0072229 N 0.855
GL22529 Drosophila persimilis FBgn0160121 N 0.855
GM13852 Drosophila sechellia FBgn0168783 N 0.855
GJ12004 Drosophila virilis FBgn0199256 N 0.855
GD13137 Drosophila simulans FBgn0184859 N 0.855
GI13232 Drosophila mojavensis FBgn0135989 N 0.855
GG14070 Drosophila erecta FBgn0106332 N 0.855
GH16287 Drosophila grimshawi FBgn0123758 N 0.855
CG13298 Drosophila melanogaster FBgn0035692 N 0.855
GF10910 Drosophila ananassae FBgn0087950 N 0.855
GE20495 Drosophila yakuba FBgn0068445 N 0.855
LOAG_04189 Loa loa LOAG_04189 N 0.841
C50D2.5 Caenorhabditis elegans C50D2.5 N 0.838
CBG06987 Caenorhabditis briggsae CBG06987 N 0.838
XP_002160322.1 Hydra magnipapillata XP_002160322.1 N 0.838
CRE22109 Caenorhabditis remanei CRE22109 N 0.838
CJA01433 Caenorhabditis japonica CJA01433 N 0.838
CBN08400 Caenorhabditis brenneri CBN08400 N 0.838
fgeneshTA2_pm.C_scaffold_21000029 Trichoplax adhaerens fgeneshTA2_pm.C_scaffold_21000029 N 0.826
ENSCHOG00000013886 Choloepus hoffmanni ENSCHOG00000013886 N 0.824
SNAPOd2T00023714001 Oikopleura dioica SNAPOd2T00023714001 N 0.824
e_gw1.13.49.1 Emiliania huxleyi e_gw1.13.49.1 N 0.797
estExt_fgenesh2_pg.C_240194 Selaginella moellendorfii estExt_fgenesh2_pg.C_240194 N 0.779
TA13725 Theileria annulata TA13725 N 0.779
Aqu1.214150 Amphimedon queenslandica Aqu1.214150 N 0.779
XM_002873508.1 Arabidopsis lyrata scaffold_601250.1 N 0.768
AT5G12190 Arabidopsis thaliana AT5G12190-TAIR-G N 0.768
LOC_Os03g59710 Oryza sativa LOC_Os03g59710 N 0.765
BGIOSIBCE013412 Oryza indica BGIOSIBCE013412 N 0.765
DDB_G0286297 Dictyostelium discoideum DDB_G0286297 N 0.765
EDO06533.1 Babesia bovis EDO06533.1 N 0.765
SPRG_00106 Saprolegnia parasitica SPRG_00106 N 0.765
mgf016428m Mimulus guttatus mgf016428m N 0.754
GP3.080340 Batrachochytrium dendrobatidis GP3.080340 N 0.754
GRMZM2G107745 Zea mays GRMZM2G107745 N 0.750
GRMZM2G358416 Zea mays GRMZM2G358416 N 0.750
SB01G003790 Sorghum bicolor Sb01g003790 N 0.750
e_gw1.17.197.1 Volvox carteri e_gw1.17.197.1 N 0.750
estExt_Genewise1.C_630098 Physcomitrella patens estExt_Genewise1.C_630098 N 0.750
TP02_0539 Theileria parva TP02_0539 N 0.750
PCHAS_144180 Plasmodium chabaudi PCHAS_144180 N 0.739
chr2.CM0308.280.nc Lotus japonicus chr2.CM0308.280.nc N 0.739
estExt_fgenesh1_pg.C_130126 Phytophthora capsici estExt_fgenesh1_pg.C_130126 N 0.739
Medtr5g096400 Medicago truncatula Medtr5g096400 N 0.739
s_454910 Phytophthora sojae s_454910 N 0.739
Glyma02g44710.1 Glycine max Glyma02g44710.1 N 0.739
PITG_10282 Phytophthora infestans PITG_10282 N 0.739
BRADI1G04240 Brachypodium distachyon BRADI1G04240 N 0.735
cassava30358.valid.m1 Manihot esculenta cassava30358.valid.m1 N 0.735
PFL1200c Plasmodium falciparum PFL1200c N 0.735
PVX_123875 Plasmodium vivax PVX_123875 N 0.735
PKH_144160 Plasmodium knowlesi PKH_144160 N 0.735
PK21780.1 Cannabis sativa PK21780.1 N 0.735
MDP0000185506 Malus x domestica MDP0000185506 N 0.735
GSVIVG00037329001 Vitis vinifera GSVIVG00037329001 N 0.735
29868.m000351 Ricinus communis 29868.m000351 N 0.735
Glyma14g04020.1 Glycine max Glyma14g04020.1 N 0.735
GSPATP00004048001 Paramecium tetraurelia GSPATP00004048001 N 0.735
ppa013405m Prunus persica ppa013405m N 0.735
B9GG60_POPTR Populus trichocarpa POPTR_0001s28000 N 0.735
ppa013407m Prunus persica ppa013407m N 0.735
Cucsa.086930 Cucumis sativus Cucsa.086930 N 0.725
fgenesh1_pm.C_scaffold_108000003 Phytophthora ramorum fgenesh1_pm.C_scaffold_108000003 N 0.725
PBANKA_143980 Plasmodium berghei PBANKA_143980 N 0.725
estExt_Genewise1Plus.C_10491 Micromonas pusilla estExt_Genewise1Plus.C_10491 N 0.721
B9HNI9_POPTR Populus trichocarpa POPTR_0009s07180 N 0.721
GSPATP00010032001 Paramecium tetraurelia GSPATP00010032001 N 0.721
estExt_fgeneshPB_pg.C_50297 Phycomyces blakesleeanus estExt_fgeneshPB_pg.C_50297 N 0.710
PHATR_8132 Phaeodactylum tricornutum Phatr8132 N 0.710
estExt_GenewiseW_1.C_340090 Chlamydomonas reinhardtii estExt_GenewiseW_1.C_340090 N 0.706
estExt_Genewise1Plus.C_10695 Chlorella NC64A estExt_Genewise1Plus.C_10695 N 0.706
e_gw1.11.964.1 Ostreococcus RCC809 e_gw1.11.964.1 N 0.706
PY07239 Plasmodium yoelii PY07239 N 0.706
32497 Aureococcus anophagefferens 32497 N 0.703