AAH57709 (Xenopus laevis)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 AAH57709 T59493_0.6 Xenbase (2010-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
AAH57709 RRM 21 88

Links

Other RRM family RBPs
Other Xenopus laevis RBPs

138 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
sf3b14 Xenopus tropicalis ENSXETG00000018204 N 0.985
0610009D07Rik Dipodomys ordii ENSDORG00000009772 N 0.971
LOC100056247 Equus caballus ENSECAG00000015618 N 0.971
ENSFCAG00000004304 Felis catus ENSFCAG00000004304 N 0.971
AC008073.5 Homo sapiens ENSG00000115128 N 0.971
ENSDNOG00000007148 Dasypus novemcinctus ENSDNOG00000007148 N 0.971
ENSSSCG00000008587 Sus scrofa ENSSSCG00000008587 N 0.971
SF3B14 Taeniopygia guttata ENSTGUG00000013191 N 0.971
ENSTBEG00000012532 Tupaia belangeri ENSTBEG00000012532 N 0.971
LOC100386467 Callithrix jacchus ENSCJAG00000007716 N 0.971
ENSCPOG00000008016 Cavia porcellus ENSCPOG00000008016 N 0.971
sf3b14 Danio rerio ENSDARG00000009753 N 0.971
SF3B14 Gallus gallus ENSGALG00000016501 N 0.971
ENSORLG00000015955 Oryzias latipes ENSORLG00000015955 N 0.971
ENSOCUG00000022008 Oryctolagus cuniculus ENSOCUG00000022008 N 0.971
ENSPPYG00000012603 Pongo pygmaeus ENSPPYG00000012603 N 0.971
XM_515324.2 Pan troglodytes ENSPTRG00000011709 N 0.971
ENSPVAG00000011346 Pteropus vampyrus ENSPVAG00000011346 N 0.971
ENSOANG00000007627 Ornithorhynchus anatinus ENSOANG00000007627 N 0.971
0610009D07Rik Mus musculus ENSMUSG00000037361 N 0.971
ENSLAFG00000029423 Loxodonta africana ENSLAFG00000029423 N 0.971
ENSMGAG00000014057 Meleagris gallopavo ENSMGAG00000014057 N 0.971
ENSMLUG00000002473 Myotis lucifugus ENSMLUG00000002473 N 0.971
XM_001098393.1 Macaca mulatta ENSMMUG00000001282 N 0.971
ENSCHOG00000000689 Choloepus hoffmanni ENSCHOG00000000689 N 0.971
XM_532889.2 Canis familiaris ENSCAFG00000003957 N 0.971
ENSVPAG00000005546 Vicugna pacos ENSVPAG00000005546 N 0.971
ENSTTRG00000013430 Tursiops truncatus ENSTTRG00000013430 N 0.971
ENSSARG00000011902 Sorex araneus ENSSARG00000011902 N 0.971
Ame_R001592 Ailuropoda melanoleuca Ame_R001592 N 0.971
Q2KIQ7_BOVIN Bos taurus ENSBTAG00000003407 N 0.971
ENSACAG00000011677 Anolis carolinensis ENSACAG00000011677 N 0.971
ENSTSYG00000013978 Tarsius syrichta ENSTSYG00000013978 N 0.971
ENSGACG00000004803 Gasterosteus aculeatus ENSGACG00000004803 N 0.956
ENSTRUG00000006551 Takifugu rubripes ENSTRUG00000006551 N 0.941
ENSTNIG00000009719 Tetraodon nigroviridis ENSTNIG00000009719 N 0.941
XM_001364269.1 Monodelphis domestica ENSMODG00000002144 N 0.941
amel4_ncbi_hmm5835 Apis mellifera amel4_ncbi_hmm5835 N 0.926
DGIL_AUG5s10565g5t1 Acyrtosiphon pisum DGIL_AUG5s10565g5t1 N 0.926
amel4_ncbi_hmm5835 Tribolium castaneum amel4_ncbi_hmm5835 N 0.926
nasonia_NCBI_hmm648054 Nasonia vitripennis nasonia_NCBI_hmm648054 N 0.926
nasonia_NCBI_hmm146063 Nasonia vitripennis nasonia_NCBI_hmm146063 N 0.926
ISCW024082 Ixodes scapularis ISCW024082 N 0.926
PHUM617060 Pediculus humanus PHUM617060 N 0.926
CpipJ_CPIJ008576 Culex pipiens CpipJ_CPIJ008576 N 0.912
estExt_GenewiseH_1.C_6800062 Branchiostoma floridae estExt_GenewiseH_1.C_6800062 N 0.912
CPIJ008576 Culex quinquefasciatus CPIJ008576 N 0.912
AAEL005909 Aedes aegypti AAEL005909 N 0.912
AGAP002780 Anopheles gambiae AGAP002780 N 0.897
estExt_fgenesh2_kg.C_sca_670005 Lottia gigantea estExt_fgenesh2_kg.C_sca_670005 N 0.897
estExt_fgenesh1_kg.C_20004 Daphnia pulex estExt_fgenesh1_kg.C_20004 N 0.884
estExt_fgenesh1_pg.C_1580052 Nematostella vectensis estExt_fgenesh1_pg.C_1580052 N 0.882
ENSCSAVG00000008970 Ciona savignyi ENSCSAVG00000008970 N 0.868
68671 Helobdella robusta 68671 N 0.868
ENSCING00000012689 Ciona intestinalis ENSCING00000012689 N 0.868
GK17258 Drosophila willistoni FBgn0219257 N 0.855
GF10910 Drosophila ananassae FBgn0087950 N 0.855
GJ12004 Drosophila virilis FBgn0199256 N 0.855
GG14070 Drosophila erecta FBgn0106332 N 0.855
GD13137 Drosophila simulans FBgn0184859 N 0.855
GH16287 Drosophila grimshawi FBgn0123758 N 0.855
GL22529 Drosophila persimilis FBgn0160121 N 0.855
GM13852 Drosophila sechellia FBgn0168783 N 0.855
GA12181-RA Drosophila pseudoobscura FBgn0072229 N 0.855
GI13232 Drosophila mojavensis FBgn0135989 N 0.855
CG13298 Drosophila melanogaster FBgn0035692 N 0.855
GE20495 Drosophila yakuba FBgn0068445 N 0.855
XP_002160322.1 Hydra magnipapillata XP_002160322.1 N 0.853
ENSCHOG00000013886 Choloepus hoffmanni ENSCHOG00000013886 N 0.853
Minc01156 Meloidogyne incognita Minc01156 N 0.838
PPA24922 Pristionchus pacificus PPA24922 N 0.824
estExt_fgenesh1_pg.C_2760028 Capitella teleta estExt_fgenesh1_pg.C_2760028 N 0.824
Sjc_0071370 Schistosoma japonicum Sjc_0071370 N 0.824
Smp_032060 Schistosoma mansoni Smp_032060 N 0.824
LOAG_04189 Loa loa LOAG_04189 N 0.812
fgeneshTA2_pm.C_scaffold_21000029 Trichoplax adhaerens fgeneshTA2_pm.C_scaffold_21000029 N 0.812
CRE22109 Caenorhabditis remanei CRE22109 N 0.809
C50D2.5 Caenorhabditis elegans C50D2.5 N 0.809
CBG06987 Caenorhabditis briggsae CBG06987 N 0.809
Aqu1.214150 Amphimedon queenslandica Aqu1.214150 N 0.809
e_gw1.17.197.1 Volvox carteri e_gw1.17.197.1 N 0.809
CBN08400 Caenorhabditis brenneri CBN08400 N 0.809
CJA01433 Caenorhabditis japonica CJA01433 N 0.809
SNAPOd2T00023714001 Oikopleura dioica SNAPOd2T00023714001 N 0.794
e_gw1.13.49.1 Emiliania huxleyi e_gw1.13.49.1 N 0.783
estExt_GenewiseW_1.C_340090 Chlamydomonas reinhardtii estExt_GenewiseW_1.C_340090 N 0.779
SB01G003790 Sorghum bicolor Sb01g003790 N 0.779
GRMZM2G107745 Zea mays GRMZM2G107745 N 0.779
GRMZM2G358416 Zea mays GRMZM2G358416 N 0.779
estExt_fgenesh2_pg.C_240194 Selaginella moellendorfii estExt_fgenesh2_pg.C_240194 N 0.779
TA13725 Theileria annulata TA13725 N 0.765
BRADI1G04240 Brachypodium distachyon BRADI1G04240 N 0.765
BGIOSIBCE013412 Oryza indica BGIOSIBCE013412 N 0.765
SPRG_00106 Saprolegnia parasitica SPRG_00106 N 0.765
LOC_Os03g59710 Oryza sativa LOC_Os03g59710 N 0.765
mgf016428m Mimulus guttatus mgf016428m N 0.754
EDO06533.1 Babesia bovis EDO06533.1 N 0.750
estExt_Genewise1.C_630098 Physcomitrella patens estExt_Genewise1.C_630098 N 0.750
B9HNI9_POPTR Populus trichocarpa POPTR_0009s07180 N 0.750
estExt_Genewise1Plus.C_10491 Micromonas pusilla estExt_Genewise1Plus.C_10491 N 0.750
Medtr5g096400 Medicago truncatula Medtr5g096400 N 0.739
PITG_10282 Phytophthora infestans PITG_10282 N 0.739
s_454910 Phytophthora sojae s_454910 N 0.739
GP3.080340 Batrachochytrium dendrobatidis GP3.080340 N 0.739
Glyma02g44710.1 Glycine max Glyma02g44710.1 N 0.739
chr2.CM0308.280.nc Lotus japonicus chr2.CM0308.280.nc N 0.739
AT5G12190 Arabidopsis thaliana AT5G12190-TAIR-G N 0.739
estExt_fgenesh1_pg.C_130126 Phytophthora capsici estExt_fgenesh1_pg.C_130126 N 0.739
PCHAS_144180 Plasmodium chabaudi PCHAS_144180 N 0.739
XM_002873508.1 Arabidopsis lyrata scaffold_601250.1 N 0.739
GSVIVG00037329001 Vitis vinifera GSVIVG00037329001 N 0.735
ppa013407m Prunus persica ppa013407m N 0.735
B9GG60_POPTR Populus trichocarpa POPTR_0001s28000 N 0.735
ppa013405m Prunus persica ppa013405m N 0.735
Glyma14g04020.1 Glycine max Glyma14g04020.1 N 0.735
PK21780.1 Cannabis sativa PK21780.1 N 0.735
estExt_fgeneshCV_pm.C_140033 Chlorella vulgaris estExt_fgeneshCV_pm.C_140033 N 0.735
estExt_Genemark1.C_140122 Coccomyxa C 169 estExt_Genemark1.C_140122 N 0.735
cassava30358.valid.m1 Manihot esculenta cassava30358.valid.m1 N 0.735
MDP0000185506 Malus x domestica MDP0000185506 N 0.735
29868.m000351 Ricinus communis 29868.m000351 N 0.735
RO3G_04631 Rhizopus oryzae RO3G_04631 N 0.725
Cucsa.086930 Cucumis sativus Cucsa.086930 N 0.725
PBANKA_143980 Plasmodium berghei PBANKA_143980 N 0.725
estExt_fgeneshPB_pg.C_50297 Phycomyces blakesleeanus estExt_fgeneshPB_pg.C_50297 N 0.725
fgeneshMC_pg.3_#_621 Mucor circinelloides fgeneshMC_pg.3_#_621 N 0.725
fgenesh1_pm.C_scaffold_108000003 Phytophthora ramorum fgenesh1_pm.C_scaffold_108000003 N 0.725
estExt_Genewise1Plus.C_10695 Chlorella NC64A estExt_Genewise1Plus.C_10695 N 0.721
DDB_G0286297 Dictyostelium discoideum DDB_G0286297 N 0.721
GSPATP00004048001 Paramecium tetraurelia GSPATP00004048001 N 0.721
TP02_0539 Theileria parva TP02_0539 N 0.721
PFL1200c Plasmodium falciparum PFL1200c N 0.706
PKH_144160 Plasmodium knowlesi PKH_144160 N 0.706
PY07239 Plasmodium yoelii PY07239 N 0.706
GSPATP00010032001 Paramecium tetraurelia GSPATP00010032001 N 0.706
MDP0000916880 Malus x domestica MDP0000916880 N 0.706
PVX_123875 Plasmodium vivax PVX_123875 N 0.706
32497 Aureococcus anophagefferens 32497 N 0.703