BRADI4G02150 (Brachypodium distachyon)
YTH

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF04146 (YTH) IPR007275 BRADI4G02150 T61958_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
BRADI4G02150.1 YTH 491 581

Links

Other YTH family RBPs
Other Brachypodium distachyon RBPs

166 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
LOC_Os03g53670 Oryza sativa LOC_Os03g53670 N 0.945
SB01G008170 Sorghum bicolor Sb01g008170 N 0.934
GRMZM2G126338 Zea mays GRMZM2G126338 N 0.923
PDK_20s1308332g001 Phoenix dactylifera PDK_20s1308332g001 N 0.901
BRADI1G05970 Brachypodium distachyon BRADI1G05970 N 0.868
GRMZM2G330019 Zea mays GRMZM2G330019 N 0.857
cassava35662.valid.m1 Manihot esculenta cassava35662.valid.m1 N 0.857
cassava35663.valid.m1 Manihot esculenta cassava35663.valid.m1 N 0.857
cassava35659.valid.m1 Manihot esculenta cassava35659.valid.m1 N 0.857
Sb01g046550 Sorghum bicolor Sb01g046550 N 0.857
cassava35657.valid.m1 Manihot esculenta cassava35657.valid.m1 N 0.857
cassava35658.valid.m1 Manihot esculenta cassava35658.valid.m1 N 0.857
cassava35665.valid.m1 Manihot esculenta cassava35665.valid.m1 N 0.857
cassava35660.valid.m1 Manihot esculenta cassava35660.valid.m1 N 0.857
cassava35661.valid.m1 Manihot esculenta cassava35661.valid.m1 N 0.857
cassava35666.valid.m1 Manihot esculenta cassava35666.valid.m1 N 0.857
cassava38866.m1 Manihot esculenta cassava38866.m1 N 0.857
cassava38867.m1 Manihot esculenta cassava38867.m1 N 0.857
GSVIVG00025494001 Vitis vinifera GSVIVG00025494001 N 0.857
cassava35667.valid.m1 Manihot esculenta cassava35667.valid.m1 N 0.857
cassava12387.valid.m1 Manihot esculenta cassava12387.valid.m1 N 0.846
cassava12388.valid.m1 Manihot esculenta cassava12388.valid.m1 N 0.846
cassava12386.valid.m1 Manihot esculenta cassava12386.valid.m1 N 0.846
cassava12389.valid.m1 Manihot esculenta cassava12389.valid.m1 N 0.846
GRMZM2G076062 Zea mays GRMZM2G076062 N 0.846
cassava30728.valid.m1 Manihot esculenta cassava30728.valid.m1 N 0.846
mgf013935m Mimulus guttatus mgf013935m N 0.846
mgf013853m Mimulus guttatus mgf013853m N 0.846
mgf009938m Mimulus guttatus mgf009938m N 0.846
cassava30729.valid.m1 Manihot esculenta cassava30729.valid.m1 N 0.846
cassava30727.valid.m1 Manihot esculenta cassava30727.valid.m1 N 0.846
cassava18205.valid.m1 Manihot esculenta cassava18205.valid.m1 N 0.824
cassava18204.valid.m1 Manihot esculenta cassava18204.valid.m1 N 0.824
cassava18203.valid.m1 Manihot esculenta cassava18203.valid.m1 N 0.824
cassava20495.m1 Manihot esculenta cassava20495.m1 N 0.824
cassava20494.m1 Manihot esculenta cassava20494.m1 N 0.824
LOC_Os03g06240 Oryza sativa LOC_Os03g06240 N 0.824
BGIOSIBCE009738 Oryza indica BGIOSIBCE009738 N 0.824
BRADI1G74560 Brachypodium distachyon BRADI1G74560 N 0.824
SB01G005500 Sorghum bicolor Sb01g005500 N 0.824
ECT3 Arabidopsis thaliana AT5G61020-TAIR-G N 0.813
LOC_Os08g12760 Oryza sativa LOC_Os08g12760 N 0.813
XM_002866364.1 Arabidopsis lyrata fgenesh2_kg.8__2071__AT5G61020.1 N 0.813
BGIOSIBCE026930 Oryza indica BGIOSIBCE026930 N 0.813
BRADI3G18190 Brachypodium distachyon BRADI3G18190 N 0.813
PK23716.1 Cannabis sativa PK23716.1 N 0.813
SB07G006330 Sorghum bicolor Sb07g006330 N 0.813
GRMZM2G144726 Zea mays GRMZM2G144726 N 0.802
GRMZM2G442195 Zea mays GRMZM2G442195 N 0.802
Glyma05g30020.1 Glycine max Glyma05g30020.1 N 0.802
B9GXX7_POPTR Populus trichocarpa POPTR_0003s20840 N 0.802
SB02G003990 Sorghum bicolor Sb02g003990 N 0.802
BGIOSIBCE012954 Oryza indica BGIOSIBCE012954 N 0.791
Cucsa.142200 Cucumis sativus Cucsa.142200 N 0.791
SB07G024500 Sorghum bicolor Sb07g024500 N 0.791
LOC_Os08g44200 Oryza sativa LOC_Os08g44200 N 0.791
A9PED2_POPTR Populus trichocarpa POPTR_0019s04990 N 0.791
SB06G027960 Sorghum bicolor Sb06g027960 N 0.791
Glyma08g13130.1 Glycine max Glyma08g13130.1 N 0.791
MDP0000124048 Malus x domestica MDP0000124048 N 0.791
MDP0000718677 Malus x domestica MDP0000718677 N 0.791
BGIOSIBCE028829 Oryza indica BGIOSIBCE028829 N 0.791
MDP0000129009 Malus x domestica MDP0000129009 N 0.780
Medtr6g030800 Medicago truncatula Medtr6g030800 N 0.780
29950.m001140 Ricinus communis 29950.m001140 N 0.780
BRADI3G42640 Brachypodium distachyon BRADI3G42640 N 0.780
ECT2 Arabidopsis thaliana AT3G13460-TAIR-G N 0.780
Glyma16g04590.1 Glycine max Glyma16g04590.1 N 0.780
Medtr6g030790 Medicago truncatula Medtr6g030790 N 0.780
Glyma19g28710.1 Glycine max Glyma19g28710.1 N 0.780
MDP0000488588 Malus x domestica MDP0000488588 N 0.780
XM_002884922.1 Arabidopsis lyrata fgenesh2_kg.3__1434__AT3G13460.1 N 0.780
Medtr7g100450 Medicago truncatula Medtr7g100450 N 0.780
GRMZM2G025488 Zea mays GRMZM2G025488 N 0.780
BGIOSIBCE023845 Oryza indica BGIOSIBCE023845 N 0.769
cassava1918.valid.m1 Manihot esculenta cassava1918.valid.m1 N 0.769
cassava1917.valid.m1 Manihot esculenta cassava1917.valid.m1 N 0.769
cassava1916.valid.m1 Manihot esculenta cassava1916.valid.m1 N 0.769
GSVIVG00033395001 Vitis vinifera GSVIVG00033395001 N 0.769
XM_002891791.1 Arabidopsis lyrata fgenesh1_pg.C_scaffold_1004195 N 0.769
LOC_Os07g07490 Oryza sativa LOC_Os07g07490 N 0.769
LOC_Os04g51940 Oryza sativa LOC_Os04g51940 N 0.769
PK17832.1 Cannabis sativa PK17832.1 N 0.758
ECT5 Arabidopsis thaliana AT3G13060-TAIR-G N 0.758
Medtr4g136900 Medicago truncatula Medtr4g136900 N 0.758
BRADI3G06027 Brachypodium distachyon BRADI3G06027 N 0.758
Glyma02g07920.1 Glycine max Glyma02g07920.1 N 0.758
B9N5D4_POPTR Populus trichocarpa POPTR_0014s00320 N 0.758
XM_002882758.1 Arabidopsis lyrata fgenesh2_kg.3__1376__AT3G13060.2 N 0.758
ECT4 Arabidopsis thaliana AT1G55500-TAIR-G N 0.747
GSVIVG00029460001 Vitis vinifera GSVIVG00029460001 N 0.747
B9HG69_POPTR Populus trichocarpa POPTR_0007s15150 N 0.747
SB09G000580 Sorghum bicolor Sb09g000580 N 0.747
BRADI5G01317 Brachypodium distachyon BRADI5G01317 N 0.747
ECT1 Arabidopsis thaliana AT3G03950-TAIR-G N 0.747
MDP0000405927 Malus x domestica MDP0000405927 N 0.736
Glyma08g24210.1 Glycine max Glyma08g24210.1 N 0.736
MDP0000171737 Malus x domestica MDP0000171737 N 0.736
ppa002483m Prunus persica ppa002483m N 0.736
BGIOSIBCE017245 Oryza indica BGIOSIBCE017245 N 0.736
Medtr4g163280 Medicago truncatula Medtr4g163280 N 0.736
MDP0000287088 Malus x domestica MDP0000287088 N 0.736
29929.m004643 Ricinus communis 29929.m004643 N 0.736
cassava12061.valid.m1 Manihot esculenta cassava12061.valid.m1 N 0.736
MDP0000617859 Malus x domestica MDP0000617859 N 0.736
B9HBC4_POPTR Populus trichocarpa POPTR_0006s07970 N 0.736
gw1.181.55.1 Physcomitrella patens gw1.181.55.1 N 0.736
XM_002882275.1 Arabidopsis lyrata fgenesh2_kg.3__349__AT3G03950.3 N 0.736
Glyma07g00280.1 Glycine max Glyma07g00280.1 N 0.736
ppa002588m Prunus persica ppa002588m N 0.736
cassava6538.valid.m1 Manihot esculenta cassava6538.valid.m1 N 0.736
PK05579.1 Cannabis sativa PK05579.1 N 0.736
LOC_Os05g01520 Oryza sativa LOC_Os05g01520 N 0.736
B9GMK5_POPTR Populus trichocarpa POPTR_0001s13870 N 0.736
ECT10 Arabidopsis thaliana AT5G58190-TAIR-G N 0.725
ppa003664m Prunus persica ppa003664m N 0.725
MDP0000248088 Malus x domestica MDP0000248088 N 0.725
MDP0000552419 Malus x domestica MDP0000552419 N 0.725
PK26094.1 Cannabis sativa PK26094.1 N 0.725
BGIOSIBCE016517 Oryza indica BGIOSIBCE016517 N 0.725
Cucsa.356240 Cucumis sativus Cucsa.356240 N 0.725
cassava22612.valid.m1 Manihot esculenta cassava22612.valid.m1 N 0.725
GRMZM2G303312 Zea mays GRMZM2G303312 N 0.725
29890.m000285 Ricinus communis 29890.m000285 N 0.725
B9N817_POPTR Populus trichocarpa POPTR_0018s14670 N 0.725
chr3.CM0292.380.nc Lotus japonicus chr3.CM0292.380.nc N 0.725
XM_002864508.1 Arabidopsis lyrata fgenesh1_pm.C_scaffold_8001450 N 0.725
Cucsa.135220 Cucumis sativus Cucsa.135220 N 0.725
gw1.198.66.1 Physcomitrella patens gw1.198.66.1 N 0.725
cassava17772.valid.m1 Manihot esculenta cassava17772.valid.m1 N 0.714
cassava42992.valid.m1 Manihot esculenta cassava42992.valid.m1 N 0.714
SB03G031190 Sorghum bicolor Sb03g031190 N 0.714
GSVIVG00010494001 Vitis vinifera GSVIVG00010494001 N 0.714
GSVIVG00017649001 Vitis vinifera GSVIVG00017649001 N 0.714
B9HII9_POPTR Populus trichocarpa POPTR_0008s09960 N 0.714
Glyma08g17240.1 Glycine max Glyma08g17240.1 N 0.714
cassava17771.valid.m1 Manihot esculenta cassava17771.valid.m1 N 0.714
cassava42993.valid.m1 Manihot esculenta cassava42993.valid.m1 N 0.714
gw1.1.157.1 Selaginella moellendorfii gw1.1.157.1 N 0.714
GRMZM2G169116 Zea mays GRMZM2G169116 N 0.714
LOC_Os01g48790 Oryza sativa LOC_Os01g48790 N 0.703
LOC_Os04g04000 Oryza sativa LOC_Os04g04000 N 0.703
B9HI18_POPTR Populus trichocarpa POPTR_0008s08030 N 0.703
BGIOSIBCE013986 Oryza indica BGIOSIBCE013986 N 0.703
MDP0000306387 Malus x domestica MDP0000306387 N 0.703
GSVIVG00036696001 Vitis vinifera GSVIVG00036696001 N 0.703
GSVIVG00023248001 Vitis vinifera GSVIVG00023248001 N 0.703
XM_002894050.1 Arabidopsis lyrata fgenesh2_kg.1__3903__AT1G48110.2 N 0.703
MDP0000231231 Malus x domestica MDP0000231231 N 0.703
chr6.LjT36O06.80.nd Lotus japonicus chr6.LjT36O06.80.nd N 0.703
BRADI2G46590 Brachypodium distachyon BRADI2G46590 N 0.703
MDP0000286471 Malus x domestica MDP0000286471 N 0.703
B9HYD4_POPTR Populus trichocarpa POPTR_0010s18300 N 0.703
BGIOSIBCE003171 Oryza indica BGIOSIBCE003171 N 0.703
MDP0000132385 Malus x domestica MDP0000132385 N 0.703
ECT7 Arabidopsis thaliana AT1G48110-TAIR-G N 0.703
Glyma17g04270.1 Glycine max Glyma17g04270.1 N 0.703
Glyma09g03590.1 Glycine max Glyma09g03590.1 N 0.703
PK01736.1 Cannabis sativa PK01736.1 N 0.703
PDK_20s1631851g001 Phoenix dactylifera PDK_20s1631851g001 N 0.703
PDK_20s1441394g001 Phoenix dactylifera PDK_20s1441394g001 N 0.703
ppa018635m Prunus persica ppa018635m N 0.703
Medtr2g036990 Medicago truncatula Medtr2g036990 N 0.703
GRMZM2G127780 Zea mays GRMZM2G127780 N 0.703
mgf019846m Mimulus guttatus mgf019846m N 0.703
Medtr2g085380 Medicago truncatula Medtr2g085380 N 0.703