CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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XP_002156821.1
(
Hydra magnipapillata
)
YTH
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF04146 (YTH)
IPR007275
XP_002156821.1
T62574_0.6
Superfamily (2011-Oct-26)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
XP_002156821.1
YTH
446
536
LLFSVNSSGHFCGIAEMTSEVDLNIETGIWVQDKWKGRFDVRWIYVKDVPNNILRHIRLENNENKPVTNSRDTQEVSPEKGKQVIKIIHNY
Links
Other
YTH
family RBPs
Other
Hydra magnipapillata
RBPs
140 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
XP_002161951.1
Hydra magnipapillata
XP_002161951.1
N
1.000
Aqu1.220420
Amphimedon queenslandica
Aqu1.220420
N
0.824
e_gw.90.29.1
Nematostella vectensis
e_gw.90.29.1
N
0.802
YTHDF2
Homo sapiens
ENSG00000198492
N
0.791
YTHDF2
Gorilla gorilla
ENSGGOG00000024069
N
0.791
YTHDF2
Tarsius syrichta
ENSTSYG00000004178
N
0.791
YTHDF2
Callithrix jacchus
ENSCJAG00000009804
N
0.791
YTHDF2
Tursiops truncatus
ENSTTRG00000013603
N
0.791
YTHDF2
Meleagris gallopavo
ENSMGAG00000001610
N
0.791
YTHDF2
Myotis lucifugus
ENSMLUG00000012606
N
0.791
YTHDF2
Cavia porcellus
ENSCPOG00000019907
N
0.791
YTHDF2
Macropus eugenii
ENSMEUG00000016488
N
0.791
Ythdf2
Dipodomys ordii
ENSDORG00000016564
N
0.791
YTHDF2
Oryctolagus cuniculus
ENSOCUG00000010612
N
0.791
YTHDF2
Echinops telfairi
ENSETEG00000017614
N
0.791
YTHDF2
Microcebus murinus
ENSMICG00000003729
N
0.791
YTHDF2
Choloepus hoffmanni
ENSCHOG00000000357
N
0.791
YTHDF2
Felis catus
ENSFCAG00000012446
N
0.791
LOC100070667
Equus caballus
ENSECAG00000023108
N
0.791
YTHDF2
Sorex araneus
ENSSARG00000001187
N
0.791
XR_023164.1
Pan troglodytes
ENSPTRG00000000439
N
0.791
YTHDF2
Procavia capensis
ENSPCAG00000007587
N
0.791
YTHDF2
Erinaceus europaeus
ENSEEUG00000011398
N
0.791
Ame_R001131
Ailuropoda melanoleuca
Ame_R001131
N
0.791
LOC419583
Gallus gallus
ENSGALG00000000959
N
0.791
Ythdf2
Mus musculus
ENSMUSG00000040025
N
0.791
YTHDF2
Loxodonta africana
ENSLAFG00000030451
N
0.791
YTHDF2
Pteropus vampyrus
ENSPVAG00000017224
N
0.791
YTHDF2
Monodelphis domestica
ENSMODG00000010973
N
0.791
YTHD2_BOVIN
Bos taurus
ENSBTAG00000015771
N
0.791
YTHDF2
Macaca mulatta
ENSMMUG00000011391
N
0.791
YTHDF2
Anolis carolinensis
ENSACAG00000010846
N
0.791
YTHDF2
Ochotona princeps
ENSOPRG00000017111
N
0.791
YTHDF2
Canis familiaris
ENSCAFG00000011700
N
0.791
YTHDF2
Otolemur garnettii
ENSOGAG00000014648
N
0.791
YTHDF2
Taeniopygia guttata
ENSTGUG00000017347
N
0.780
YTHDF2
Ornithorhynchus anatinus
ENSOANG00000006124
N
0.780
YTHDF2
Oryzias latipes
ENSORLG00000014323
N
0.769
YTHDF2
Gasterosteus aculeatus
ENSGACG00000009603
N
0.769
YTHDF2
Takifugu rubripes
ENSTRUG00000011923
N
0.769
Ame_R014316
Ailuropoda melanoleuca
Ame_R014316
N
0.769
XP_001187433.1
Strongylocentrotus purpuratus
XP_001187433.1
N
0.769
yth2
Danio rerio
ENSDARG00000014498
N
0.769
XP_786921.2
Strongylocentrotus purpuratus
XP_786921.2
N
0.769
YTHDF2
Tetraodon nigroviridis
ENSTNIG00000017263
N
0.769
YTHDF1
Loxodonta africana
ENSLAFG00000008884
N
0.758
Ythdf1
Mus musculus
ENSMUSG00000038848
N
0.758
ENSMODG00000016842
Monodelphis domestica
ENSMODG00000016842
N
0.758
ENSMEUG00000011285
Macropus eugenii
ENSMEUG00000011285
N
0.758
YTHDF1
Pan troglodytes
ENSPTRG00000013730
N
0.758
ENSMGAG00000011168
Meleagris gallopavo
ENSMGAG00000011168
N
0.758
YTHDF1
Myotis lucifugus
ENSMLUG00000002241
N
0.758
YTHDF1
Macaca mulatta
ENSMMUG00000009227
N
0.758
ENSMGAG00000006139
Meleagris gallopavo
ENSMGAG00000006139
N
0.758
ENSMODG00000008255
Monodelphis domestica
ENSMODG00000008255
N
0.758
YTHDF1
Erinaceus europaeus
ENSEEUG00000007461
N
0.758
YTHDF1
Tursiops truncatus
ENSTTRG00000001804
N
0.758
ENSPPYG00000011226
Pongo pygmaeus
ENSPPYG00000011226
N
0.758
A6MKQ0_CALJA
Callithrix jacchus
ENSCJAG00000010056
N
0.758
YTHDF1
Canis familiaris
ENSCAFG00000012772
N
0.758
AAH68959
Xenopus laevis
AAH68959
N
0.758
e_gw.462.3.1
Branchiostoma floridae
e_gw.462.3.1
N
0.758
ENSACAG00000005560
Anolis carolinensis
ENSACAG00000005560
N
0.758
ENSACAG00000016837
Anolis carolinensis
ENSACAG00000016837
N
0.758
YTHDF1
Gorilla gorilla
ENSGGOG00000008340
N
0.758
YTHDF3
Taeniopygia guttata
ENSTGUG00000011243
N
0.758
Q5ZME7_CHICK
Gallus gallus
ENSGALG00000005745
N
0.758
Q5ZLM1_CHICK
Gallus gallus
ENSGALG00000015505
N
0.758
LOC776373
Gallus gallus
ENSGALG00000019473
N
0.758
Ythdf1
Rattus norvegicus
ENSRNOG00000027015
N
0.758
YTHDF1
Homo sapiens
ENSG00000149658
N
0.758
YTHDF1
Taeniopygia guttata
ENSTGUG00000007565
N
0.758
LOC100060217
Equus caballus
ENSECAG00000019475
N
0.758
ENSOANG00000003723
Ornithorhynchus anatinus
ENSOANG00000003723
N
0.758
YTHDF1
Procavia capensis
ENSPCAG00000002452
N
0.758
ENSPPYG00000018626
Pongo pygmaeus
ENSPPYG00000018626
N
0.747
ENSPCAG00000016282
Procavia capensis
ENSPCAG00000016282
N
0.747
ENSSARG00000007626
Sorex araneus
ENSSARG00000007626
N
0.747
ENSVPAG00000008104
Vicugna pacos
ENSVPAG00000008104
N
0.747
ENSTTRG00000014564
Tursiops truncatus
ENSTTRG00000014564
N
0.747
ythdf2
Xenopus tropicalis
ENSXETG00000020636
N
0.747
ythdf3
Xenopus tropicalis
ENSXETG00000021659
N
0.747
Ame_R018798
Ailuropoda melanoleuca
Ame_R018798
N
0.747
ENSTSYG00000009117
Tarsius syrichta
ENSTSYG00000009117
N
0.747
ENSTRUG00000007870
Takifugu rubripes
ENSTRUG00000007870
N
0.747
ENSPVAG00000002740
Pteropus vampyrus
ENSPVAG00000002740
N
0.747
YTHDF1
Pteropus vampyrus
ENSPVAG00000017568
N
0.747
Ythdf3
Rattus norvegicus
ENSRNOG00000010084
N
0.747
ENSTBEG00000005747
Tupaia belangeri
ENSTBEG00000005747
N
0.747
XR_024462.1
Pan troglodytes
ENSPTRG00000030993
N
0.747
ENSMMUG00000006729
Macaca mulatta
ENSMMUG00000006729
N
0.747
ENSCAFG00000007215
Canis familiaris
ENSCAFG00000007215
N
0.747
Ythdf3
Dipodomys ordii
ENSDORG00000014699
N
0.747
ENSETEG00000007144
Echinops telfairi
ENSETEG00000007144
N
0.747
ENSG00000185728
Homo sapiens
ENSG00000185728
N
0.747
ythdf3
Danio rerio
ENSDARG00000057939
N
0.747
ENSCHOG00000010194
Choloepus hoffmanni
ENSCHOG00000010194
N
0.747
YTHDF1
Cavia porcellus
ENSCPOG00000010202
N
0.747
ENSCPOG00000002961
Cavia porcellus
ENSCPOG00000002961
N
0.747
YTHDF3
Callithrix jacchus
ENSCJAG00000009217
N
0.747
YTHDF3
Bos taurus
ENSBTAG00000018557
N
0.747
ENSGGOG00000027681
Gorilla gorilla
ENSGGOG00000027681
N
0.747
ENSOCUG00000008723
Oryctolagus cuniculus
ENSOCUG00000008723
N
0.747
YTHDF1
Oryctolagus cuniculus
ENSOCUG00000012780
N
0.747
AAH81017
Xenopus laevis
AAH81017
N
0.747
AAH78013
Xenopus laevis
AAH78013
N
0.747
Ythdf3
Mus musculus
ENSMUSG00000047213
N
0.747
ENSOANG00000005053
Ornithorhynchus anatinus
ENSOANG00000005053
N
0.747
ENSLAFG00000016052
Loxodonta africana
ENSLAFG00000016052
N
0.747
ENSMICG00000009379
Microcebus murinus
ENSMICG00000009379
N
0.747
AAH60445
Xenopus laevis
AAH60445
N
0.736
DGIL_AUG5s6515g6t1
Acyrtosiphon pisum
DGIL_AUG5s6515g6t1
N
0.736
estExt_fgenesh1_pm.C_4090006
Capitella teleta
estExt_fgenesh1_pm.C_4090006
N
0.736
ENSTRUG00000005049
Takifugu rubripes
ENSTRUG00000005049
N
0.736
ythdf1
Xenopus tropicalis
ENSXETG00000027086
N
0.736
ENSTRUG00000004288
Takifugu rubripes
ENSTRUG00000004288
N
0.736
ENSORLG00000014665
Oryzias latipes
ENSORLG00000014665
N
0.736
ENSGACG00000002613
Gasterosteus aculeatus
ENSGACG00000002613
N
0.736
ENSGACG00000012014
Gasterosteus aculeatus
ENSGACG00000012014
N
0.736
YTHDF1
Otolemur garnettii
ENSOGAG00000000480
N
0.736
ENSORLG00000009739
Oryzias latipes
ENSORLG00000009739
N
0.736
YTHDF1
Ochotona princeps
ENSOPRG00000001758
N
0.736
Ythdf1
Dipodomys ordii
ENSDORG00000002879
N
0.736
ENSGACG00000002998
Gasterosteus aculeatus
ENSGACG00000002998
N
0.736
ENSTNIG00000003975
Tetraodon nigroviridis
ENSTNIG00000003975
N
0.736
ythdf1
Danio rerio
ENSDARG00000016447
N
0.736
ENSTNIG00000012698
Tetraodon nigroviridis
ENSTNIG00000012698
N
0.736
YTHDF1
Bos taurus
ENSBTAG00000010383
N
0.725
ENSTNIG00000012490
Tetraodon nigroviridis
ENSTNIG00000012490
N
0.714
ENSORLG00000008640
Oryzias latipes
ENSORLG00000008640
N
0.714
152141
Helobdella robusta
152141
N
0.714
ENSCING00000004166
Ciona intestinalis
ENSCING00000004166
N
0.714
PHUM167190
Pediculus humanus
PHUM167190
N
0.714
ENSCSAVG00000010987
Ciona savignyi
ENSCSAVG00000010987
N
0.703
CpipJ_CPIJ011115
Culex pipiens
CpipJ_CPIJ011115
N
0.703
CPIJ011115
Culex quinquefasciatus
CPIJ011115
N
0.703
CPIJ011116
Culex quinquefasciatus
CPIJ011116
N
0.703
62837
Helobdella robusta
62837
N
0.703
CpipJ_CPIJ011116
Culex pipiens
CpipJ_CPIJ011116
N
0.703
BGIBMGA007551
Bombyx mori
BGIBMGA007551
N
0.703