CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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XP_786921.2
(
Strongylocentrotus purpuratus
)
YTH
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF04146 (YTH)
IPR007275
XP_786921.2
T62581_0.6
Superfamily (2011-Oct-26)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
XP_786921.2
YTH
501
591
LIYSVNGSGHFCGVAEMMSEVDYTTNTGVWAQDKWKGRFDVRWVYVKDVPNSQLRHIRLENNDNKPVTNSRDTQEVLLDKAKQVMKIIHNF
Links
Other
YTH
family RBPs
Other
Strongylocentrotus purpuratus
RBPs
136 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
XP_001187433.1
Strongylocentrotus purpuratus
XP_001187433.1
N
1.000
YTHDF2
Taeniopygia guttata
ENSTGUG00000017347
N
0.824
ENSGACG00000002613
Gasterosteus aculeatus
ENSGACG00000002613
N
0.813
YTHDF2
Oryzias latipes
ENSORLG00000014323
N
0.813
ENSGACG00000012014
Gasterosteus aculeatus
ENSGACG00000012014
N
0.813
LOC419583
Gallus gallus
ENSGALG00000000959
N
0.813
YTHDF2
Homo sapiens
ENSG00000198492
N
0.813
YTHDF2
Gasterosteus aculeatus
ENSGACG00000009603
N
0.813
ENSORLG00000014665
Oryzias latipes
ENSORLG00000014665
N
0.813
YTHDF2
Erinaceus europaeus
ENSEEUG00000011398
N
0.813
XR_023164.1
Pan troglodytes
ENSPTRG00000000439
N
0.813
YTHDF2
Procavia capensis
ENSPCAG00000007587
N
0.813
YTHDF2
Echinops telfairi
ENSETEG00000017614
N
0.813
YTHDF2
Felis catus
ENSFCAG00000012446
N
0.813
ENSORLG00000009739
Oryzias latipes
ENSORLG00000009739
N
0.813
YTHDF2
Ochotona princeps
ENSOPRG00000017111
N
0.813
YTHDF2
Microcebus murinus
ENSMICG00000003729
N
0.813
Ythdf2
Mus musculus
ENSMUSG00000040025
N
0.813
YTHDF2
Monodelphis domestica
ENSMODG00000010973
N
0.813
YTHDF2
Myotis lucifugus
ENSMLUG00000012606
N
0.813
YTHDF2
Macaca mulatta
ENSMMUG00000011391
N
0.813
YTHDF2
Meleagris gallopavo
ENSMGAG00000001610
N
0.813
YTHDF2
Macropus eugenii
ENSMEUG00000016488
N
0.813
YTHDF1
Otolemur garnettii
ENSOGAG00000000480
N
0.813
YTHDF2
Otolemur garnettii
ENSOGAG00000014648
N
0.813
YTHDF2
Gorilla gorilla
ENSGGOG00000024069
N
0.813
YTHDF2
Oryctolagus cuniculus
ENSOCUG00000010612
N
0.813
YTHDF2
Loxodonta africana
ENSLAFG00000030451
N
0.813
Ythdf2
Dipodomys ordii
ENSDORG00000016564
N
0.813
LOC100070667
Equus caballus
ENSECAG00000023108
N
0.813
YTHDF2
Canis familiaris
ENSCAFG00000011700
N
0.813
ENSTRUG00000005049
Takifugu rubripes
ENSTRUG00000005049
N
0.813
YTHDF2
Choloepus hoffmanni
ENSCHOG00000000357
N
0.813
YTHDF2
Tetraodon nigroviridis
ENSTNIG00000017263
N
0.813
ENSTNIG00000003975
Tetraodon nigroviridis
ENSTNIG00000003975
N
0.813
YTHDF2
Takifugu rubripes
ENSTRUG00000011923
N
0.813
YTHD2_BOVIN
Bos taurus
ENSBTAG00000015771
N
0.813
Ame_R001131
Ailuropoda melanoleuca
Ame_R001131
N
0.813
YTHDF2
Tursiops truncatus
ENSTTRG00000013603
N
0.813
YTHDF2
Anolis carolinensis
ENSACAG00000010846
N
0.813
YTHDF2
Tarsius syrichta
ENSTSYG00000004178
N
0.813
YTHDF2
Callithrix jacchus
ENSCJAG00000009804
N
0.813
ENSTRUG00000004288
Takifugu rubripes
ENSTRUG00000004288
N
0.813
ythdf1
Danio rerio
ENSDARG00000016447
N
0.813
YTHDF2
Sorex araneus
ENSSARG00000001187
N
0.813
yth2
Danio rerio
ENSDARG00000014498
N
0.813
YTHDF2
Cavia porcellus
ENSCPOG00000019907
N
0.813
YTHDF2
Pteropus vampyrus
ENSPVAG00000017224
N
0.813
ythdf3
Xenopus tropicalis
ENSXETG00000021659
N
0.802
YTHDF2
Ornithorhynchus anatinus
ENSOANG00000006124
N
0.802
ENSOANG00000005053
Ornithorhynchus anatinus
ENSOANG00000005053
N
0.802
ythdf2
Xenopus tropicalis
ENSXETG00000020636
N
0.791
Ythdf1
Mus musculus
ENSMUSG00000038848
N
0.791
ENSMODG00000016842
Monodelphis domestica
ENSMODG00000016842
N
0.791
YTHDF1
Taeniopygia guttata
ENSTGUG00000007565
N
0.791
Ame_R014316
Ailuropoda melanoleuca
Ame_R014316
N
0.791
ENSTNIG00000012490
Tetraodon nigroviridis
ENSTNIG00000012490
N
0.791
YTHDF1
Macaca mulatta
ENSMMUG00000009227
N
0.791
ENSPPYG00000011226
Pongo pygmaeus
ENSPPYG00000011226
N
0.791
YTHDF3
Taeniopygia guttata
ENSTGUG00000011243
N
0.791
YTHDF1
Pan troglodytes
ENSPTRG00000013730
N
0.791
Ythdf1
Rattus norvegicus
ENSRNOG00000027015
N
0.791
ENSOANG00000003723
Ornithorhynchus anatinus
ENSOANG00000003723
N
0.791
YTHDF1
Tursiops truncatus
ENSTTRG00000001804
N
0.791
YTHDF1
Procavia capensis
ENSPCAG00000002452
N
0.791
ENSMODG00000008255
Monodelphis domestica
ENSMODG00000008255
N
0.791
ENSACAG00000016837
Anolis carolinensis
ENSACAG00000016837
N
0.791
Q5ZME7_CHICK
Gallus gallus
ENSGALG00000005745
N
0.791
Q5ZLM1_CHICK
Gallus gallus
ENSGALG00000015505
N
0.791
LOC776373
Gallus gallus
ENSGALG00000019473
N
0.791
YTHDF1
Homo sapiens
ENSG00000149658
N
0.791
YTHDF1
Erinaceus europaeus
ENSEEUG00000007461
N
0.791
A6MKQ0_CALJA
Callithrix jacchus
ENSCJAG00000010056
N
0.791
Ythdf1
Dipodomys ordii
ENSDORG00000002879
N
0.791
YTHDF1
Canis familiaris
ENSCAFG00000012772
N
0.791
LOC100060217
Equus caballus
ENSECAG00000019475
N
0.791
YTHDF1
Gorilla gorilla
ENSGGOG00000008340
N
0.791
ENSACAG00000005560
Anolis carolinensis
ENSACAG00000005560
N
0.791
ENSMEUG00000011285
Macropus eugenii
ENSMEUG00000011285
N
0.791
AAH78013
Xenopus laevis
AAH78013
N
0.791
AAH81017
Xenopus laevis
AAH81017
N
0.791
ENSMGAG00000006139
Meleagris gallopavo
ENSMGAG00000006139
N
0.791
ENSMGAG00000011168
Meleagris gallopavo
ENSMGAG00000011168
N
0.791
YTHDF1
Myotis lucifugus
ENSMLUG00000002241
N
0.791
YTHDF1
Loxodonta africana
ENSLAFG00000008884
N
0.791
YTHDF1
Cavia porcellus
ENSCPOG00000010202
N
0.780
ENSTBEG00000005747
Tupaia belangeri
ENSTBEG00000005747
N
0.780
ENSCHOG00000010194
Choloepus hoffmanni
ENSCHOG00000010194
N
0.780
ENSCPOG00000002961
Cavia porcellus
ENSCPOG00000002961
N
0.780
YTHDF3
Callithrix jacchus
ENSCJAG00000009217
N
0.780
Aqu1.220420
Amphimedon queenslandica
Aqu1.220420
N
0.780
YTHDF3
Bos taurus
ENSBTAG00000018557
N
0.780
ENSTTRG00000014564
Tursiops truncatus
ENSTTRG00000014564
N
0.780
Ame_R018798
Ailuropoda melanoleuca
Ame_R018798
N
0.780
AAH68959
Xenopus laevis
AAH68959
N
0.780
ENSSARG00000007626
Sorex araneus
ENSSARG00000007626
N
0.780
ythdf1
Xenopus tropicalis
ENSXETG00000027086
N
0.780
ENSVPAG00000008104
Vicugna pacos
ENSVPAG00000008104
N
0.780
YTHDF1
Bos taurus
ENSBTAG00000010383
N
0.780
ENSTSYG00000009117
Tarsius syrichta
ENSTSYG00000009117
N
0.780
ENSCAFG00000007215
Canis familiaris
ENSCAFG00000007215
N
0.780
ENSPVAG00000002740
Pteropus vampyrus
ENSPVAG00000002740
N
0.780
ENSGGOG00000027681
Gorilla gorilla
ENSGGOG00000027681
N
0.780
ENSG00000185728
Homo sapiens
ENSG00000185728
N
0.780
ENSETEG00000007144
Echinops telfairi
ENSETEG00000007144
N
0.780
ENSOCUG00000008723
Oryctolagus cuniculus
ENSOCUG00000008723
N
0.780
ENSLAFG00000016052
Loxodonta africana
ENSLAFG00000016052
N
0.780
AAH60445
Xenopus laevis
AAH60445
N
0.780
ENSMICG00000009379
Microcebus murinus
ENSMICG00000009379
N
0.780
Ythdf3
Mus musculus
ENSMUSG00000047213
N
0.780
ENSMMUG00000006729
Macaca mulatta
ENSMMUG00000006729
N
0.780
ENSPCAG00000016282
Procavia capensis
ENSPCAG00000016282
N
0.780
Ythdf3
Rattus norvegicus
ENSRNOG00000010084
N
0.780
YTHDF1
Pteropus vampyrus
ENSPVAG00000017568
N
0.780
ythdf3
Danio rerio
ENSDARG00000057939
N
0.780
XR_024462.1
Pan troglodytes
ENSPTRG00000030993
N
0.780
ENSPPYG00000018626
Pongo pygmaeus
ENSPPYG00000018626
N
0.780
Ythdf3
Dipodomys ordii
ENSDORG00000014699
N
0.780
XP_002161951.1
Hydra magnipapillata
XP_002161951.1
N
0.769
XP_002156821.1
Hydra magnipapillata
XP_002156821.1
N
0.769
YTHDF1
Ochotona princeps
ENSOPRG00000001758
N
0.769
ENSORLG00000008640
Oryzias latipes
ENSORLG00000008640
N
0.769
ENSGACG00000002998
Gasterosteus aculeatus
ENSGACG00000002998
N
0.758
ENSTRUG00000007870
Takifugu rubripes
ENSTRUG00000007870
N
0.758
YTHDF1
Oryctolagus cuniculus
ENSOCUG00000012780
N
0.758
estExt_fgenesh1_pm.C_4090006
Capitella teleta
estExt_fgenesh1_pm.C_4090006
N
0.747
ENSCSAVG00000010987
Ciona savignyi
ENSCSAVG00000010987
N
0.747
ENSTNIG00000012698
Tetraodon nigroviridis
ENSTNIG00000012698
N
0.747
e_gw.462.3.1
Branchiostoma floridae
e_gw.462.3.1
N
0.747
e_gw.90.29.1
Nematostella vectensis
e_gw.90.29.1
N
0.736
62837
Helobdella robusta
62837
N
0.736
ENSCING00000004166
Ciona intestinalis
ENSCING00000004166
N
0.736
AGAP003817
Anopheles gambiae
AGAP003817
N
0.725
DGIL_AUG5s6515g6t1
Acyrtosiphon pisum
DGIL_AUG5s6515g6t1
N
0.725
152141
Helobdella robusta
152141
N
0.714
BGIBMGA007551
Bombyx mori
BGIBMGA007551
N
0.703