MDP0000214614 (Malus x domestica)
CCCH ZF,RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00642 (zf-CCCH)
PF00076 (RRM_1) 		IPR000571
IPR000504 		MDP0000214614 T01099_0.6 Superfamily (2011-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
MDP0000214614 CCCH ZF 175 198
MDP0000214614 RRM 341 401

Links

Other CCCH ZF,RRM family RBPs
Other Malus x domestica RBPs

54 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
27613.m000645 Ricinus communis 27613.m000645 N 0.814
29223.m000023 Ricinus communis 29223.m000023 N 0.800
30169.m006471 Ricinus communis 30169.m006471 N 0.718
AT2G05160 Arabidopsis thaliana AT2G05160-TAIR-G N 0.759
BRADI4G44040 Brachypodium distachyon BRADI4G44040 N 0.718
cassava2158.valid.m1 Manihot esculenta cassava2158.valid.m1 N 0.701
cassava30651.valid.m1 Manihot esculenta cassava30651.valid.m1 N 0.718
cassava30652.valid.m1 Manihot esculenta cassava30652.valid.m1 N 0.718
cassava31399.valid.m1 Manihot esculenta cassava31399.valid.m1 N 0.793
cassava31400.valid.m1 Manihot esculenta cassava31400.valid.m1 N 0.793
cassava36931.valid.m1 Manihot esculenta cassava36931.valid.m1 N 0.839
cassava7063.valid.m1 Manihot esculenta cassava7063.valid.m1 N 0.824
cassava7292.valid.m1 Manihot esculenta cassava7292.valid.m1 N 0.706
cassava7293.valid.m1 Manihot esculenta cassava7293.valid.m1 N 0.706
cassava7294.valid.m1 Manihot esculenta cassava7294.valid.m1 N 0.706
cassava9561.m1 Manihot esculenta cassava9561.m1 N 0.706
chr2.CM0018.150.nc Lotus japonicus chr2.CM0018.150.nc N 0.709
Cucsa.166080 Cucumis sativus Cucsa.166080 N 0.718
e_gw1.136.54.1 Physcomitrella patens e_gw1.136.54.1 N 0.718
XM_002876131.1 Arabidopsis lyrata fgenesh2_kg.5__1664__AT3G52980.1 N 0.747
Glyma01g43700.1 Glycine max Glyma01g43700.1 N 0.701
Glyma09g35980.1 Glycine max Glyma09g35980.1 N 0.718
Glyma09g35990.1 Glycine max Glyma09g35990.1 N 0.718
Glyma11g01780.1 Glycine max Glyma11g01780.1 N 0.701
Glyma12g01340.1 Glycine max Glyma12g01340.1 N 0.718
Glyma12g01350.1 Glycine max Glyma12g01350.1 N 0.718
Glyma14g01930.1 Glycine max Glyma14g01930.1 N 0.701
GRMZM2G044004 Zea mays GRMZM2G044004 N 0.741
GRMZM2G346113 Zea mays GRMZM2G346113 N 0.706
GSVIVG00037782001 Vitis vinifera GSVIVG00037782001 N 0.713
LjT28K11.10.nd Lotus japonicus LjT28K11.10.nd N 0.706
MDP0000120231 Malus x domestica MDP0000120231 N 0.718
MDP0000120462 Malus x domestica MDP0000120462 N 0.729
MDP0000243086 Malus x domestica MDP0000243086 N 0.706
MDP0000906147 Malus x domestica MDP0000906147 N 0.943
Medtr5g008940 Medicago truncatula Medtr5g008940 N 0.701
Medtr5g102170 Medicago truncatula Medtr5g102170 N 0.729
mgf000973m Mimulus guttatus mgf000973m N 0.706
mgf003557m Mimulus guttatus mgf003557m N 0.713
PK01281.1 Cannabis sativa PK01281.1 N 0.776
PK18074.1 Cannabis sativa PK18074.1 N 0.709
PK20504.1 Cannabis sativa PK20504.1 N 0.871
POPTR_0001s05760 Populus trichocarpa POPTR_0001s05760 N 0.706
B9GI27_POPTR Populus trichocarpa POPTR_0001s26250 N 0.729
B9GTF9_POPTR Populus trichocarpa POPTR_0002s22240 N 0.747
B9GWA9_POPTR Populus trichocarpa POPTR_0003s20310 N 0.718
B9HNZ4_POPTR Populus trichocarpa POPTR_0009s05520 N 0.706
B9IAR9_POPTR Populus trichocarpa POPTR_0014s16340 N 0.862
ppa002383m Prunus persica ppa002383m N 0.721
ppa002413m Prunus persica ppa002413m N 0.706
ppa003564m Prunus persica ppa003564m N 1.000
ppa019338m Prunus persica ppa019338m N 0.759
ppa023263m Prunus persica ppa023263m N 0.706
SB08G001980 Sorghum bicolor Sb08g001980 N 0.741