CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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MKRN1
(
Homo sapiens
)
CCCH ZF
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00642 (zf-CCCH)
IPR000571
ENSG00000133606
T02642_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSP00000255977
CCCH ZF
56
81
TKQVTCRYFMHGVCKEGDNCRYSHDL
ENSP00000255977
CCCH ZF
85
110
PYSVVCKYFQRGYCIYGDRCRYEHSK
ENSP00000255977
CCCH ZF
209
234
TKKQLCPYAAVGECRYGENCVYLHGD
ENSP00000255977
CCCH ZF
367
392
NKACRYFDEGRGSCPFGGNCFYKHAY
ENSP00000416369
CCCH ZF
56
81
TKQVTCRYFMHGVCKEGDNCRYSHDL
ENSP00000416369
CCCH ZF
85
110
PYSVVCKYFQRGYCIYGDRCRYEHSK
ENSP00000416369
CCCH ZF
209
234
TKKQLCPYAAVGECRYGENCVYLHGD
ENSP00000417640
CCCH ZF
56
81
TKQVTCRYFMHGVCKEGDNCRYSHDL
ENSP00000417640
CCCH ZF
85
107
PYSVVCKYFQRGYCIYGDRCSRA
ENSP00000417797
CCCH ZF
56
81
TKQVTCRYFMHGVCKEGDNCRYSHDL
ENSP00000417797
CCCH ZF
85
107
PYSVVCKYFQRGYCIYGDRCRRS
ENSP00000417863
CCCH ZF
1
17
MHGVCKEGDNCRYSHDL
ENSP00000417863
CCCH ZF
21
46
PYSVVCKYFQRGYCIYGDRCRYEHSK
ENSP00000417863
CCCH ZF
145
170
TKKQLCPYAAVGECRYGENCVYLHGD
ENSP00000417863
CCCH ZF
303
328
NKACRYFDEGRGSCPFGGNCFYKHAY
ENSP00000418588
CCCH ZF
1
17
MHGVCKEGDNCRYSHDL
ENSP00000418588
CCCH ZF
21
46
PYSVVCKYFQRGYCIYGDRCRYEHSK
ENSP00000418588
CCCH ZF
145
165
TKKQLCPYAAVGECRYGENCV
ENSP00000418620
CCCH ZF
14
32
YFMHGVCKEGDNCRYSHDL
ENSP00000418620
CCCH ZF
36
61
PYSVVCKYFQRGYCIYGDRCRYEHSK
ENSP00000418864
CCCH ZF
1
17
MHGVCKEGDNCRYSHDL
ENSP00000418864
CCCH ZF
21
46
PYSVVCKYFQRGYCIYGDRCRYEHSK
ENSP00000418864
CCCH ZF
145
170
TKKQLCPYAAVGECRYGENCVYLHGD
ENSP00000419843
CCCH ZF
1
17
MHGVCKEGDNCRYSHDL
ENSP00000419843
CCCH ZF
21
46
PYSVVCKYFQRGYCIYGDRCRYEHSK
ENSP00000419894
CCCH ZF
1
17
MHGVCKEGDNCRYSHDL
ENSP00000419894
CCCH ZF
21
43
PYSVVCKYFQRGYCIYGDRCSRA
Links
Other
CCCH ZF
family RBPs
Other
Homo sapiens
RBPs
48 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
AAH74368
Xenopus laevis
AAH74368
N
0.788
Ame_R001963
Ailuropoda melanoleuca
Ame_R001963
N
0.959
MKRN1
Anolis carolinensis
ENSACAG00000010934
N
0.885
A2VDX6_BOVIN
Bos taurus
ENSBTAG00000008306
N
0.931
ENSCAFG00000003953
Canis familiaris
ENSCAFG00000003953
N
0.969
MKRN1
Choloepus hoffmanni
ENSCHOG00000011015
N
0.990
MKRN1
Callithrix jacchus
ENSCJAG00000004068
N
0.837
ENSCPOG00000000948
Cavia porcellus
ENSCPOG00000000948
N
0.933
mkrn1
Danio rerio
ENSDARG00000041665
N
0.774
MKRN1
Dasypus novemcinctus
ENSDNOG00000019564
N
0.987
LOC100065893
Equus caballus
ENSECAG00000017929
N
0.959
MKRN1
Echinops telfairi
ENSETEG00000007348
N
0.930
MKRN1
Felis catus
ENSFCAG00000013043
N
0.969
MKRN1
Gasterosteus aculeatus
ENSGACG00000019227
N
0.755
Q9PTI4_CHICK
Gallus gallus
ENSGALG00000012852
N
0.875
ENSGGOG00000023977
Gorilla gorilla
ENSGGOG00000023977
N
1.000
ENSGGOG00000024940
Gorilla gorilla
ENSGGOG00000024940
N
0.872
MKRN1
Loxodonta africana
ENSLAFG00000018408
N
0.971
MKRN1_MACEU
Macropus eugenii
ENSMEUG00000007399
N
0.885
MKRN1
Meleagris gallopavo
ENSMGAG00000013208
N
0.827
MKRN1
Microcebus murinus
ENSMICG00000002114
N
0.952
MKRN1
Myotis lucifugus
ENSMLUG00000006053
N
0.956
ENSMMUG00000001017
Macaca mulatta
ENSMMUG00000001017
N
0.837
MKRN1
Macaca mulatta
ENSMMUG00000010420
N
0.969
ENSMODG00000013686
Monodelphis domestica
ENSMODG00000013686
N
0.885
Mkrn1
Mus musculus
ENSMUSG00000029922
N
0.981
ENSOCUG00000010180
Oryctolagus cuniculus
ENSOCUG00000010180
N
0.949
ENSOCUG00000013132
Oryctolagus cuniculus
ENSOCUG00000013132
N
0.700
ENSOCUG00000021607
Oryctolagus cuniculus
ENSOCUG00000021607
N
0.700
ENSOGAG00000009877
Otolemur garnettii
ENSOGAG00000009877
N
0.897
MKRN1
Ochotona princeps
ENSOPRG00000010353
N
0.933
MKRN1
Oryzias latipes
ENSORLG00000012765
N
0.800
MKRN1
Procavia capensis
ENSPCAG00000014683
N
0.897
ENSPPYG00000018057
Pongo pygmaeus
ENSPPYG00000018057
N
0.979
ENSPPYG00000020255
Pongo pygmaeus
ENSPPYG00000020255
N
0.885
XR_024878.1
Pan troglodytes
ENSPTRG00000019766
N
0.990
MKRN1
Pteropus vampyrus
ENSPVAG00000011185
N
0.974
Q68FR1_RAT
Rattus norvegicus
ENSRNOG00000009280
N
0.962
MKRN1
Sorex araneus
ENSSARG00000013683
N
0.879
MKRN1
Sus scrofa
ENSSSCG00000016498
N
0.990
MKRN1
Tupaia belangeri
ENSTBEG00000004564
N
0.958
MKRN1
Taeniopygia guttata
ENSTGUG00000011669
N
0.806
MKRN1
Tetraodon nigroviridis
ENSTNIG00000007231
N
0.736
NP_001072050.1
Takifugu rubripes
ENSTRUG00000012057
N
0.745
MKRN1
Tarsius syrichta
ENSTSYG00000009996
N
0.907
MKRN1
Tursiops truncatus
ENSTTRG00000009528
N
0.990
Q6GLT5
Xenopus laevis
Q6GLT5
N
0.788