CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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ENSRNOG00000019487
(
Rattus norvegicus
)
KH
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00013 (KH_1)
IPR018111
ENSRNOG00000019487
T19443_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
PCBP2
M043_0.6
Homo sapiens
CCYYCCH
RNAcompete
Ray et al.(2013)
RNCMPT00044
0.847
pcbp2
M211_0.6
Danio rerio
WWUCCC
RNAcompete
Ray et al.(2013)
RNCMPT00246
0.815
Pcbp1
M207_0.6
Mus musculus
CYUUCC
RNAcompete
Ray et al.(2013)
RNCMPT00239
0.794
PCBP1
M177_0.6
Homo sapiens
CCWWHCC
RNAcompete
Ray et al.(2013)
RNCMPT00186
0.794
Pcbp3
M188_0.6
Mus musculus
UUUYCC
RNAcompete
Ray et al.(2013)
RNCMPT00215
0.746
For this family, RBPs with RBD identity >
0.7
will likely have a similar motif
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSRNOP00000050308
KH
18
77
TIRLLMHGKEVGSIIRKSRESVKKLQEKSARINISEGNCPERIITLAGPTNAIFKAFAMI
ENSRNOP00000050308
KH
100
159
VTVVPASQCGSLIGKGTIKEIRESTGAQVQAAGNMLPNSTERAITIAGILPSIIECVKQI
ENSRNOP00000050308
KH
246
308
SHELTLPNDLIGCIIGRQGAKINEIRQMSGAQIKTANPVEGSTDRQVTITGPAASISLAQYLI
Links
Other
KH
family RBPs
Other
Rattus norvegicus
RBPs
89 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
e_gw1.172.82.1
Capitella teleta
e_gw1.172.82.1
I
0.000
aret
Drosophila melanogaster
FBgn0000114
D
0.000
GF14192
Drosophila ananassae
FBgn0091219
I
0.000
GH11642
Drosophila grimshawi
FBgn0119122
I
0.000
GH11645
Drosophila grimshawi
FBgn0119125
I
0.000
GI17944
Drosophila mojavensis
FBgn0140684
I
0.000
GL18624
Drosophila persimilis
FBgn0156225
I
0.000
GM26763
Drosophila sechellia
FBgn0181616
I
0.000
GD23828
Drosophila simulans
FBgn0195198
I
0.000
GJ17715
Drosophila virilis
FBgn0204884
I
0.000
GJ17718
Drosophila virilis
FBgn0204887
I
0.000
GK15493
Drosophila willistoni
FBgn0217498
I
0.000
GK15495
Drosophila willistoni
FBgn0217500
I
0.000
GE18580
Drosophila yakuba
FBgn0235987
I
0.000
GA25725-RB
Drosophila pseudoobscura
FBgn0247102
I
0.000
FBgn0262475
Drosophila melanogaster
FBgn0262475
I
0.000