CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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B9I3I8_POPTR
(
Populus trichocarpa
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
POPTR_0012s09200
T45630_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
POPTR_0012s09200.1
RRM
206
276
IFVGNLPYDVDSEKLAMLFEQAGTVEIAEVIYNRETDTSRGFGFVTMSTVEESEKAVEMLHRYDLDGRFLT
POPTR_0012s09200.1
RRM
300
370
IYVGNLPWDVDSGRLEQIFSEHGKVVSARVVFDRETNRSRGFGFVTMSTESELNDAIAALDGQNLDGRPIR
Links
Other
RRM
family RBPs
Other
Populus trichocarpa
RBPs
40 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
Ame_R019916
Ailuropoda melanoleuca
Ame_R019916
I
0.000
ENSCAFG00000016520
Canis familiaris
ENSCAFG00000016520
I
0.000
XM_549034.2
Canis familiaris
ENSCAFG00000016523
I
0.000