e_gwEuk.5.259.1 (Ostreococcus lucimarinus)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 e_gwEuk.5.259.1 T50272_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
estExt_gwp_gw1.C_700168
M205_0.6 		Physcomitrella patens WUGGAG RNAcompete
Ray et al.(2013)
RNCMPT00237 		0.776
sf3b4
M195_0.6 		Danio rerio CAAAAG RNAcompete
Ray et al.(2013)
RNCMPT00224 		0.722
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
e_gwEuk.5.259.1 RRM 31 101
e_gwEuk.5.259.1 RRM 117 188

Links

Other RRM family RBPs
Other Ostreococcus lucimarinus RBPs

97 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
30183.m001303 Ricinus communis 30183.m001303 I 0.797
59062 Aureococcus anophagefferens 59062 I 0.727
99199 Helobdella robusta 99199 I 0.713
AAEL013795 Aedes aegypti AAEL013795 I 0.706
AAH45264 Xenopus laevis AAH45264 I 0.741
AAH77458 Xenopus laevis AAH77458 I 0.741
AGAP001538 Anopheles gambiae AGAP001538 I 0.706
amel4_ncbi_hmm1889 Apis mellifera amel4_ncbi_hmm1889 I 0.706
Ame_R019118 Ailuropoda melanoleuca Ame_R019118 I 0.734
Aqu1.212443 Amphimedon queenslandica Aqu1.212443 I 0.713
Aqu1.214461 Amphimedon queenslandica Aqu1.214461 I 0.713
emb2444 Arabidopsis thaliana AT2G18510-TAIR-G I 0.755
BGIOSIBCE032328 Oryza indica BGIOSIBCE032328 I 0.790
BRADI3G27920 Brachypodium distachyon BRADI3G27920 I 0.783
CAOG_06059 Capsaspora owczarzaki CAOG_06059 I 0.713
cassava31033.valid.m1 Manihot esculenta cassava31033.valid.m1 I 0.811
CPIJ014149 Culex quinquefasciatus CPIJ014149 I 0.706
CpipJ_CPIJ014149 Culex pipiens CpipJ_CPIJ014149 I 0.706
Cucsa.251850 Cucumis sativus Cucsa.251850 I 0.804
DGIL_AUG5s13542g6t1 Acyrtosiphon pisum DGIL_AUG5s13542g6t1 I 0.706
ENSACAG00000010019 Anolis carolinensis ENSACAG00000010019 I 0.734
Q3MHE6_BOVIN Bos taurus ENSBTAG00000012495 I 0.734
ENSBTAG00000012793 Bos taurus ENSBTAG00000012793 I 0.720
ENSCAFG00000011617 Canis familiaris ENSCAFG00000011617 I 0.734
A6MKC5_CALJA Callithrix jacchus ENSCJAG00000000793 I 0.734
ENSCPOG00000008267 Cavia porcellus ENSCPOG00000008267 I 0.734
sf3b4 Danio rerio ENSDARG00000018574 D 0.734
LOC100054350 Equus caballus ENSECAG00000024737 I 0.734
ENSFCAG00000010106 Felis catus ENSFCAG00000010106 I 0.734
SF3B4 Homo sapiens ENSG00000143368 I 0.734
SF3B4 Gasterosteus aculeatus ENSGACG00000003819 I 0.734
SF3B4 Gallus gallus ENSGALG00000013352 I 0.734
SF3B4 Gorilla gorilla ENSGGOG00000004761 I 0.734
ENSLAFG00000008531 Loxodonta africana ENSLAFG00000008531 I 0.734
ENSMGAG00000000653 Meleagris gallopavo ENSMGAG00000000653 I 0.734
SF3B4 Microcebus murinus ENSMICG00000000296 I 0.734
ENSMLUG00000010789 Myotis lucifugus ENSMLUG00000010789 I 0.734
SF3B4 Macaca mulatta ENSMMUG00000007256 I 0.734
ENSMODG00000018767 Monodelphis domestica ENSMODG00000018767 I 0.734
Sf3b4 Mus musculus ENSMUSG00000068856 I 0.734
ENSOCUG00000004614 Oryctolagus cuniculus ENSOCUG00000004614 I 0.734
SF3B4 Otolemur garnettii ENSOGAG00000006265 I 0.734
ENSOPRG00000010808 Ochotona princeps ENSOPRG00000010808 I 0.734
SF3B4 Oryzias latipes ENSORLG00000003062 I 0.734
ENSPCAG00000000392 Procavia capensis ENSPCAG00000000392 I 0.727
SF3B4 Pan troglodytes ENSPTRG00000001243 I 0.734
ENSPVAG00000014171 Pteropus vampyrus ENSPVAG00000014171 I 0.734
Sf3b4 Rattus norvegicus ENSRNOG00000021181 I 0.734
ENSSSCG00000006665 Sus scrofa ENSSSCG00000006665 I 0.734
ENSSTOG00000006570 Spermophilus tridecemlineatus ENSSTOG00000006570 I 0.710
SF3B4 Taeniopygia guttata ENSTGUG00000004470 I 0.734
SF3B4 Tetraodon nigroviridis ENSTNIG00000009156 I 0.734
SF3B4 Takifugu rubripes ENSTRUG00000004516 I 0.734
SF3B4 Tarsius syrichta ENSTSYG00000009295 I 0.734
ENSTTRG00000005217 Tursiops truncatus ENSTTRG00000005217 I 0.734
ENSVPAG00000008152 Vicugna pacos ENSVPAG00000008152 I 0.734
sf3b4 Xenopus tropicalis ENSXETG00000011038 I 0.734
estExt_fgenesh2_pm.C_9540001 Branchiostoma floridae estExt_fgenesh2_pm.C_9540001 I 0.727
estExt_Genemark1.C_60101 Coccomyxa C 169 estExt_Genemark1.C_60101 I 0.783
estExt_Genewise1.C_230076 Capitella teleta estExt_Genewise1.C_230076 I 0.706
estExt_Genewise1.C_60440 Chlorella vulgaris estExt_Genewise1.C_60440 I 0.783
estExt_Genewise1.C_sca_2060028 Lottia gigantea estExt_Genewise1.C_sca_2060028 I 0.755
estExt_Genewise1Plus.C_00387 Phytophthora capsici estExt_Genewise1Plus.C_00387 N 0.706
estExt_gwp_gw1.C_700168 Physcomitrella patens estExt_gwp_gw1.C_700168 D 0.776
e_gw1.3.432.1 Micromonas pusilla e_gw1.3.432.1 I 0.776
e_gw1.6.938.1 Trichoplax adhaerens e_gw1.6.938.1 I 0.713
FER_chlre3.3.376.1.5 Chlamydomonas reinhardtii FER_chlre3.3.376.1.5 I 0.790
XM_002886132.1 Arabidopsis lyrata fgenesh2_kg.3__3460__AT2G18510.1 I 0.762
fgenesh2_pg.scaffold_36000101 Branchiostoma floridae fgenesh2_pg.scaffold_36000101 I 0.727
Glyma09g00310.1 Glycine max Glyma09g00310.1 I 0.797
Glyma12g36950.1 Glycine max Glyma12g36950.1 I 0.790
GRMZM2G102639 Zea mays GRMZM2G102639 I 0.776
GRMZM2G170699 Zea mays GRMZM2G170699 I 0.783
GSVIVG00018991001 Vitis vinifera GSVIVG00018991001 I 0.818
gw1.05.00.253.1 Ostreococcus tauri gw1.05.00.253.1 I 0.951
gw1.3.260.1 Chlorella NC64A gw1.3.260.1 I 0.734
gw1.5.900.1 Ostreococcus RCC809 gw1.5.900.1 I 0.923
ISCW010601 Ixodes scapularis ISCW010601 I 0.720
LOC_Os10g31900 Oryza sativa LOC_Os10g31900 I 0.790
MDP0000131129 Malus x domestica MDP0000131129 I 0.804
MDP0000320945 Malus x domestica MDP0000320945 I 0.804
Medtr3g087340 Medicago truncatula Medtr3g087340 I 0.797
nasonia_NCBI_hmm192414 Nasonia vitripennis nasonia_NCBI_hmm192414 I 0.706
PHUM263440 Pediculus humanus PHUM263440 I 0.706
PK08238.1 Cannabis sativa PK08238.1 I 0.811
B9HEU6_POPTR Populus trichocarpa POPTR_0007s12570 I 0.797
ppa007508m Prunus persica ppa007508m I 0.790
PTSG_00878 Salpingoeca rosetta PTSG_00878 I 0.727
RO3G_10200 Rhizopus oryzae RO3G_10200 I 0.706
SB01G020190 Sorghum bicolor Sb01g020190 I 0.790
SNAPOd2T00022637001 Oikopleura dioica SNAPOd2T00022637001 I 0.741
SPPG_04182 Spizellomyces punctatus SPPG_04182 I 0.755
SPRG_10647 Saprolegnia parasitica SPRG_10647 N 0.720
s_462942 Phytophthora sojae s_462942 N 0.720
XP_001185838.1 Strongylocentrotus purpuratus XP_001185838.1 I 0.720
XP_002157695.1 Hydra magnipapillata XP_002157695.1 I 0.720
XP_784135.2 Strongylocentrotus purpuratus XP_784135.2 I 0.720