MDP0000528470 (Malus x domestica)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 MDP0000528470 T57681_0.6 Superfamily (2011-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
MDP0000528470 RRM 122 192
MDP0000528470 RRM 216 284

Links

Other RRM family RBPs
Other Malus x domestica RBPs

39 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
30147.m013835 Ricinus communis 30147.m013835 N 0.761
ATRBP31 Arabidopsis thaliana AT4G24770-TAIR-G N 0.725
CP31B Arabidopsis thaliana AT5G50250-TAIR-G N 0.739
BGIOSIBCE028840 Oryza indica BGIOSIBCE028840 N 0.746
BRADI3G42700 Brachypodium distachyon BRADI3G42700 N 0.711
BRADI4G38260 Brachypodium distachyon BRADI4G38260 N 0.796
cassava30233.valid.m1 Manihot esculenta cassava30233.valid.m1 N 0.782
cassava511.valid.m1 Manihot esculenta cassava511.valid.m1 N 0.803
cassava512.valid.m1 Manihot esculenta cassava512.valid.m1 N 0.800
Cucsa.196330 Cucumis sativus Cucsa.196330 N 0.761
XM_002867599.1 Arabidopsis lyrata fgenesh2_kg.7__1798__AT4G24770.1 N 0.768
Glyma04g36420.1 Glycine max Glyma04g36420.1 N 0.775
Glyma05g02800.1 Glycine max Glyma05g02800.1 N 0.711
Glyma06g18470.1 Glycine max Glyma06g18470.1 N 0.768
Glyma17g13470.1 Glycine max Glyma17g13470.1 N 0.718
GRMZM2G011129 Zea mays GRMZM2G011129 N 0.796
GRMZM2G123234 Zea mays GRMZM2G123234 N 0.746
GRMZM2G158462 Zea mays GRMZM2G158462 N 0.704
GSVIVG00007596001 Vitis vinifera GSVIVG00007596001 N 0.775
GSVIVG00032361001 Vitis vinifera GSVIVG00032361001 N 0.810
LOC_Os08g44290 Oryza sativa LOC_Os08g44290 N 0.746
LOC_Os09g39180 Oryza sativa LOC_Os09g39180 N 0.768
MDP0000218595 Malus x domestica MDP0000218595 N 0.951
MDP0000224531 Malus x domestica MDP0000224531 N 0.700
MDP0000296631 Malus x domestica MDP0000296631 N 0.736
MDP0000299693 Malus x domestica MDP0000299693 N 0.736
MDP0000919119 Malus x domestica MDP0000919119 N 0.901
mgf001484m Mimulus guttatus mgf001484m N 0.810
mgf008267m Mimulus guttatus mgf008267m N 0.768
mgf009747m Mimulus guttatus mgf009747m N 0.739
PK05280.1 Cannabis sativa PK05280.1 N 0.831
A9PG08_POPTR Populus trichocarpa POPTR_0001s35830 N 0.789
B9I3I8_POPTR Populus trichocarpa POPTR_0012s09200 N 0.768
B9IF14_POPTR Populus trichocarpa POPTR_0015s09810 N 0.732
ppa008913m Prunus persica ppa008913m N 0.894
ppa009286m Prunus persica ppa009286m N 0.761
SB02G011330 Sorghum bicolor Sb02g011330 N 0.768
SB07G024400 Sorghum bicolor Sb07g024400 N 0.739
XM_002865734.1 Arabidopsis lyrata scaffold_801433.1 N 0.768