CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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fgenesh_newKGs_kg.236__13__EST_ALL.fasta.Contig10263
(
Emiliania huxleyi
)
S1
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00575 (S1)
IPR003029
fgenesh_newKGs_kg.236__13__EST_ALL.fasta.Contig10263
T61269_0.6
JGI (2010-Jan-8)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
eIF-2alpha
M231_0.6
Drosophila melanogaster
WGCAUG
RNAcompete
Ray et al.(2013)
RNCMPT00273
0.829
For this family, RBPs with RBD identity >
0.7
will likely have a similar motif
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
fgenesh_newKGs_kg.236__13__EST_ALL.fasta.Contig10263
S1
43
117
PEIDDLVMVQVRSIAEMGAYVALMEYDNIEGMILLSELSRRRIRSINKLIRVGKQEVCMVLRVDKEKGYIDLSKR
Links
Other
S1
family RBPs
Other
Emiliania huxleyi
RBPs
254 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
ENSTGUG00000016888
Taeniopygia guttata
ENSTGUG00000016888
N
0.000