CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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FUBP3
(
Tetraodon nigroviridis
)
KH
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00013 (KH_1)
IPR018111
ENSTNIG00000005858
T19603_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSTNIP00000003989
KH
80
142
TEDYKVPDRMVGFIIGRGGEQINRIQLESGCKIQIAADSGGLLERPCSLTGTPESIEHAKRLL
ENSTNIP00000003989
KH
165
229
VQEMLIPASKVGLVIGRGGDTIKQLQERAGVKMMMIQDGPLPTGADKPLRISGDPYKVQAARELV
ENSTNIP00000003989
KH
256
317
LDVPVPRFAVGIVIGRNGEMIKKIQNDAGVRIQFKADDGISPERVAMVMGQPDRCQHAVHLI
ENSTNIP00000003989
KH
355
420
EVTYTIPADKCGLVIGKGGETIKSINQQSGAHVELQRNPPPSTDPNTRVFTIRGSAQQMDVARQLI
ENSTNIP00000008581
KH
80
143
TEDYKVPDRMVGFIIGRGGEQINRIQLESGCKIQIAAADSGGLLERPCSLTGTPESIEHAKRLL
ENSTNIP00000008581
KH
166
230
VQEMLIPASKVGLVIGRGGDTIKQLQERAGVKMMMIQDGPLPTGADKPLRISGDPYKVQAARELV
ENSTNIP00000008581
KH
257
318
LDVPVPRFAVGIVIGRNGEMIKKIQNDAGVRIQFKADDGISPERVAMVMGQPDRCQHAVHLI
ENSTNIP00000008581
KH
356
421
EVTYTIPADKCGLVIGKGGETIKSINQQSGAHVELQRNPPPSTDPNTRVFTIRGSAQQMDVARQLI
Links
Other
KH
family RBPs
Other
Tetraodon nigroviridis
RBPs
80 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
RBM27
Bos taurus
ENSBTAG00000011642
N
0.000
RBM27
Oryctolagus cuniculus
ENSOCUG00000000186
N
0.000
RBM26
Ochotona princeps
ENSOPRG00000001124
N
0.000
RBM27
Ochotona princeps
ENSOPRG00000005424
N
0.000
ENSPPYG00000015909
Pongo pygmaeus
ENSPPYG00000015909
N
0.000
RBM27
Pan troglodytes
ENSPTRG00000017373
N
0.000
RBM27
Pteropus vampyrus
ENSPVAG00000005218
N
0.000
D3ZE52_RAT
Rattus norvegicus
ENSRNOG00000027250
N
0.000
RBM27
Sorex araneus
ENSSARG00000000313
N
0.000
RBM27
Tupaia belangeri
ENSTBEG00000004337
N
0.000
RBM27
Taeniopygia guttata
ENSTGUG00000000085
N
0.000
ENSTRUG00000004518
Takifugu rubripes
ENSTRUG00000004518
N
0.000
RBM27
Tursiops truncatus
ENSTTRG00000016713
N
0.000
rbm27
Xenopus tropicalis
ENSXETG00000002322
N
0.000
RBM27
Ornithorhynchus anatinus
ENSOANG00000012563
N
0.000
Rbm27
Mus musculus
ENSMUSG00000024491
N
0.000
RBM27
Monodelphis domestica
ENSMODG00000010182
N
0.000
RBM27
Canis familiaris
ENSCAFG00000006456
N
0.000
RBM27
Callithrix jacchus
ENSCJAG00000021308
N
0.000
RBM27
Cavia porcellus
ENSCPOG00000002498
N
0.000
RBM27
Dasypus novemcinctus
ENSDNOG00000019753
N
0.000
Rbm26
Dipodomys ordii
ENSDORG00000006232
N
0.000
RBM27
Equus caballus
ENSECAG00000000883
N
0.000
RBM26
Echinops telfairi
ENSETEG00000017443
N
0.000
RBM27
Homo sapiens
ENSG00000091009
N
0.000
ENSGACG00000020719
Gasterosteus aculeatus
ENSGACG00000020719
N
0.000
RBM27
Gorilla gorilla
ENSGGOG00000013312
N
0.000
RBM27
Loxodonta africana
ENSLAFG00000022447
N
0.000
RBM27
Macaca mulatta
ENSMMUG00000004476
N
0.000
RBM26
Monodelphis domestica
ENSMODG00000001574
N
0.000
Ame_R013204
Ailuropoda melanoleuca
Ame_R013204
N
0.000