CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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TIAL1
(
Oryctolagus cuniculus
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
ENSOCUG00000003783
T39622_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
TIA1
M156_0.6
Homo sapiens
WUUUUUB
RNAcompete
Ray et al.(2013)
RNCMPT00165
0.888
TIA1
M075_0.6
Homo sapiens
UUUUUBK
RNAcompete
Ray et al.(2013)
RNCMPT00077
0.888
For this family, RBPs with RBD identity >
0.7
will likely have a similar motif
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSOCUP00000003279
RRM
11
78
YVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDPYCFVEFYEHRDAAAALAAMNGRKILGKEVK
ENSOCUP00000003279
RRM
98
168
VFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIR
ENSOCUP00000003279
RRM
206
270
VYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPEKGYSFVRFSTHESAAHAIVSVNGTTIEGHVVK
ENSOCUP00000017999
RRM
1
45
YVGNLSRDVTEVLILQLFSQIGPCKSCKMITEQPDSRRVNSSVGF
ENSOCUP00000017999
RRM
38
85
RVNSSVGFSVLQHTSNDPYCFVEFYEHRDAAAALAAMNGRKILGKEVK
ENSOCUP00000017999
RRM
105
175
VFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIR
ENSOCUP00000017999
RRM
213
277
VYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPEKGYSFVRFSTHESAAHAIVSVNGTTIEGHVVK
Links
Other
RRM
family RBPs
Other
Oryctolagus cuniculus
RBPs
85 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
76581
Helobdella robusta
76581
I
0.000
estExt_fgenesh2_pg.C_360096
Branchiostoma floridae
estExt_fgenesh2_pg.C_360096
I
0.000
estExt_fgenesh2_pg.C_7640002
Branchiostoma floridae
estExt_fgenesh2_pg.C_7640002
I
0.000
XP_001184429.1
Strongylocentrotus purpuratus
XP_001184429.1
N
0.000
XP_001191950.1
Strongylocentrotus purpuratus
XP_001191950.1
N
0.000
XP_786306.2
Strongylocentrotus purpuratus
XP_786306.2
N
0.000