D3ZK54_RAT (Rattus norvegicus)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSRNOG00000025482 T41177_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
HNRNPA1
M312_0.6 		Homo sapiens Sequence logo not available UAGGGW RIP-chip
Cook et al.(2011)
560_17925491 		0.764
HNRNPA1
M271_0.6 		Homo sapiens UAGGGW SELEX
Cook et al.(2011)
23_7510636 		0.764
HNRNPA1
M022_0.6 		Homo sapiens DUAGGGW RNAcompete
Ray et al.(2013)
RNCMPT00022 		0.764
HNRNPA1L2
M023_0.6 		Homo sapiens DUAGGGW RNAcompete
Ray et al.(2013)
RNCMPT00023 		0.750
HNRNPA2B1
M024_0.6 		Homo sapiens DUAGGGW RNAcompete
Ray et al.(2013)
RNCMPT00024 		0.700
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSRNOP00000046589 RRM 15 84
ENSRNOP00000046589 RRM 106 173

Links

Other RRM family RBPs
Other Rattus norvegicus RBPs

69 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
P51992 Xenopus laevis P51992 I 0.713
ENSRNOG00000033211 Rattus norvegicus ENSRNOG00000033211 I 0.757
D3ZTB7_RAT Rattus norvegicus ENSRNOG00000031608 I 0.743
ENSRNOG00000030250 Rattus norvegicus ENSRNOG00000030250 I 0.775
D3ZB98_RAT Rattus norvegicus ENSRNOG00000029641 I 0.761
D3ZX95_RAT Rattus norvegicus ENSRNOG00000027006 I 0.748
ROA3_RAT Rattus norvegicus ENSRNOG00000027001 I 0.764
ENSRNOG00000024652 Rattus norvegicus ENSRNOG00000024652 I 0.764
D4ACP9_RAT Rattus norvegicus ENSRNOG00000021929 I 0.738
ENSRNOG00000013650 Rattus norvegicus ENSRNOG00000013650 I 0.718
D4A8U2_RAT Rattus norvegicus ENSRNOG00000007252 I 0.791
D3ZNE1_RAT Rattus norvegicus ENSRNOG00000005671 I 0.707
LOC100360986 Rattus norvegicus ENSRNOG00000001556 I 0.764
HNRNPA3 Pteropus vampyrus ENSPVAG00000010380 I 0.764
HNRNPA3 Pan troglodytes ENSPTRG00000012676 I 0.764
D3ZXA3_RAT Rattus norvegicus ENSRNOG00000038905 I 0.743
ENSRNOG00000042377 Rattus norvegicus ENSRNOG00000042377 I 0.783
P51968 Xenopus laevis P51968 I 0.716
CBU92451 Xenopus laevis CBU92451 I 0.713
CBF67578 Xenopus laevis CBF67578 I 0.713
AAI69881 Xenopus laevis AAI69881 I 0.713
AAA49950 Xenopus laevis AAA49950 I 0.713
AAA49949 Xenopus laevis AAA49949 I 0.716
hnrnpa3 Xenopus tropicalis ENSXETG00000001806 I 0.723
ENSTTRG00000015563 Tursiops truncatus ENSTTRG00000015563 I 0.769
HNRNPA3 Tursiops truncatus ENSTTRG00000014225 I 0.764
HNRNPA3 Taeniopygia guttata ENSTGUG00000008996 I 0.750
ENSSSCG00000015989 Sus scrofa ENSSSCG00000015989 I 0.745
HNRNPA3 Sus scrofa ENSSSCG00000015988 I 0.764
HNRNPA3 Sorex araneus ENSSARG00000007605 I 0.716
ENSRNOG00000043173 Rattus norvegicus ENSRNOG00000043173 I 0.752
ENSPPYG00000012967 Pongo pygmaeus ENSPPYG00000012967 I 0.770
ENSPPYG00000001326 Pongo pygmaeus ENSPPYG00000001326 I 0.800
ENSPPYG00000001012 Pongo pygmaeus ENSPPYG00000001012 I 0.738
HNRNPA3 Homo sapiens ENSG00000170144 I 0.764
HNRNPA3 Felis catus ENSFCAG00000012146 I 0.757
ENSEEUG00000000925 Erinaceus europaeus ENSEEUG00000000925 I 0.754
LOC100066794 Equus caballus ENSECAG00000023237 I 0.757
ENSDORG00000011155 Dipodomys ordii ENSDORG00000011155 I 0.741
HNRNPA3 Dasypus novemcinctus ENSDNOG00000019022 I 0.764
HNRNPA3 Cavia porcellus ENSCPOG00000011301 I 0.764
ENSCPOG00000004251 Cavia porcellus ENSCPOG00000004251 I 0.758
LOC100411573 Callithrix jacchus ENSCJAG00000023383 I 0.764
ENSCJAG00000008584 Callithrix jacchus ENSCJAG00000008584 I 0.750
ENSCJAG00000006928 Callithrix jacchus ENSCJAG00000006928 I 0.730
ENSCAFG00000023240 Canis familiaris ENSCAFG00000023240 I 0.743
HNRNPA3 Canis familiaris ENSCAFG00000015889 I 0.722
ENSCAFG00000013497 Canis familiaris ENSCAFG00000013497 I 0.764
LOC781499 Bos taurus ENSBTAG00000021580 I 0.764
HNRPA3 Gallus gallus ENSGALG00000009250 I 0.750
HNRNPA3 Anolis carolinensis ENSACAG00000012234 I 0.757
ENSMODG00000024570 Monodelphis domestica ENSMODG00000024570 I 0.786
HNRNPA3 Monodelphis domestica ENSMODG00000019803 I 0.764
Gm8991 Mus musculus ENSMUSG00000059179 I 0.750
ENSMMUG00000001858 Macaca mulatta ENSMMUG00000001858 I 0.764
HNRNPA3 Oryctolagus cuniculus ENSOCUG00000002743 I 0.764
HNRNPA3 Myotis lucifugus ENSMLUG00000003906 I 0.764
HNRNPA3 Microcebus murinus ENSMICG00000005513 I 0.700
HNRNPA3 Meleagris gallopavo ENSMGAG00000009565 I 0.750
HNRNPA3 Macropus eugenii ENSMEUG00000013622 I 0.764
HNRNPA3 Loxodonta africana ENSLAFG00000027712 I 0.748
ENSOCUG00000006431 Oryctolagus cuniculus ENSOCUG00000006431 I 0.762
ENSGGOG00000022020 Gorilla gorilla ENSGGOG00000022020 I 0.703
HNRNPA3 Gorilla gorilla ENSGGOG00000006130 I 0.764
Hnrnpa3 Mus musculus ENSMUSG00000059005 I 0.764
D3ZHS1_RAT Rattus norvegicus ENSRNOG00000017364 N 0.702
ENSRNOG00000022655 Rattus norvegicus ENSRNOG00000022655 N 0.709
D4A6Z0_RAT Rattus norvegicus ENSRNOG00000042924 N 0.764
D3ZB90_RAT Rattus norvegicus ENSRNOG00000038392 N 0.761