ENSCJAG00000006928 (Callithrix jacchus)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSCJAG00000006928 T35534_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
HNRNPA1
M312_0.6 		Homo sapiens Sequence logo not available UAGGGW RIP-chip
Cook et al.(2011)
560_17925491 		0.793
HNRNPA1
M271_0.6 		Homo sapiens UAGGGW SELEX
Cook et al.(2011)
23_7510636 		0.793
HNRNPA1
M022_0.6 		Homo sapiens DUAGGGW RNAcompete
Ray et al.(2013)
RNCMPT00022 		0.793
HNRNPA1L2
M023_0.6 		Homo sapiens DUAGGGW RNAcompete
Ray et al.(2013)
RNCMPT00023 		0.779
HNRNPA2B1
M024_0.6 		Homo sapiens DUAGGGW RNAcompete
Ray et al.(2013)
RNCMPT00024 		0.707
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSCJAP00000012825 RRM 37 106
ENSCJAP00000012825 RRM 128 196
ENSCJAP00000047907 RRM 16 85
ENSCJAP00000047907 RRM 107 175

Links

Other RRM family RBPs
Other Callithrix jacchus RBPs

193 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
HNRNPA3 Oryctolagus cuniculus ENSOCUG00000002743 I 0.887
HNRNPA3 Macropus eugenii ENSMEUG00000013622 I 0.887
HNRNPA3 Cavia porcellus ENSCPOG00000011301 I 0.887
Hnrnpa3 Mus musculus ENSMUSG00000059005 I 0.887
ENSCPOG00000004251 Cavia porcellus ENSCPOG00000004251 I 0.887
HNRNPA3 Tursiops truncatus ENSTTRG00000014225 I 0.887
HNRNPA3 Monodelphis domestica ENSMODG00000019803 I 0.887
HNRNPA3 Gorilla gorilla ENSGGOG00000006130 I 0.887
ROA3_RAT Rattus norvegicus ENSRNOG00000027001 I 0.887
HNRNPA3 Myotis lucifugus ENSMLUG00000003906 I 0.887
HNRNPA3 Homo sapiens ENSG00000170144 I 0.887
ENSMMUG00000001858 Macaca mulatta ENSMMUG00000001858 I 0.887
LOC781499 Bos taurus ENSBTAG00000021580 I 0.887
HNRNPA3 Dasypus novemcinctus ENSDNOG00000019022 I 0.887
HNRNPA3 Pan troglodytes ENSPTRG00000012676 I 0.887
LOC100360986 Rattus norvegicus ENSRNOG00000001556 I 0.887
HNRNPA3 Pteropus vampyrus ENSPVAG00000010380 I 0.887
LOC100411573 Callithrix jacchus ENSCJAG00000023383 I 0.887
ENSCAFG00000013497 Canis familiaris ENSCAFG00000013497 I 0.887
HNRNPA3 Sus scrofa ENSSSCG00000015988 I 0.887
ENSSSCG00000015989 Sus scrofa ENSSSCG00000015989 I 0.886
HNRNPA3 Felis catus ENSFCAG00000012146 I 0.886
D3ZX95_RAT Rattus norvegicus ENSRNOG00000027006 I 0.886
HNRNPA3 Anolis carolinensis ENSACAG00000012234 I 0.886
LOC100066794 Equus caballus ENSECAG00000023237 I 0.886
ENSPPYG00000012967 Pongo pygmaeus ENSPPYG00000012967 I 0.885
HNRNPA3 Taeniopygia guttata ENSTGUG00000008996 I 0.879
HNRPA3 Gallus gallus ENSGALG00000009250 I 0.879
HNRNPA3 Loxodonta africana ENSLAFG00000027712 I 0.879
HNRNPA3 Meleagris gallopavo ENSMGAG00000009565 I 0.879
Gm8991 Mus musculus ENSMUSG00000059179 I 0.879
D3ZTB7_RAT Rattus norvegicus ENSRNOG00000031608 I 0.871
ENSDORG00000011155 Dipodomys ordii ENSDORG00000011155 I 0.871
D3ZXA3_RAT Rattus norvegicus ENSRNOG00000038905 I 0.871
hnrnpa3 Xenopus tropicalis ENSXETG00000001806 I 0.857
ENSPPYG00000001012 Pongo pygmaeus ENSPPYG00000001012 I 0.851
P51968 Xenopus laevis P51968 I 0.850
AAA49949 Xenopus laevis AAA49949 I 0.850
AAI69881 Xenopus laevis AAI69881 I 0.845
CBF67578 Xenopus laevis CBF67578 I 0.845
CBU92451 Xenopus laevis CBU92451 I 0.845
P51992 Xenopus laevis P51992 I 0.845
AAA49950 Xenopus laevis AAA49950 I 0.845
ENSRNOG00000013650 Rattus norvegicus ENSRNOG00000013650 I 0.844
ENSCJAG00000008584 Callithrix jacchus ENSCJAG00000008584 I 0.844
D3ZNE1_RAT Rattus norvegicus ENSRNOG00000005671 I 0.838
HNRNPA3 Sorex araneus ENSSARG00000007605 I 0.821
ENSGGOG00000022020 Gorilla gorilla ENSGGOG00000022020 I 0.814
ENSLAFG00000029587 Loxodonta africana ENSLAFG00000029587 I 0.800
ENSACAG00000007169 Anolis carolinensis ENSACAG00000007169 I 0.800
Ame_R015370 Ailuropoda melanoleuca Ame_R015370 I 0.800
HNRNPA3 Microcebus murinus ENSMICG00000005513 I 0.796
ENSSSCG00000000288 Sus scrofa ENSSSCG00000000288 I 0.793
ENSOCUG00000013350 Oryctolagus cuniculus ENSOCUG00000013350 I 0.793
ENSRNOG00000030901 Rattus norvegicus ENSRNOG00000030901 I 0.793
ENSDNOG00000009228 Dasypus novemcinctus ENSDNOG00000009228 I 0.793
ENSTBEG00000008238 Tupaia belangeri ENSTBEG00000008238 I 0.793
ROA1_PANTR Pan troglodytes ENSPTRG00000031363 I 0.793
Hnrnpa1 Mus musculus ENSMUSG00000046434 I 0.793
ROA1_PANTR Pan troglodytes ENSPTRG00000028756 I 0.793
Ame_R011792 Ailuropoda melanoleuca Ame_R011792 I 0.793
ENSCJAG00000033856 Callithrix jacchus ENSCJAG00000033856 I 0.793
ROA1_BOVIN Bos taurus ENSBTAG00000001553 I 0.793
ENSTTRG00000004505 Tursiops truncatus ENSTTRG00000004505 I 0.793
Hnrnpa1 Rattus norvegicus ENSRNOG00000036839 I 0.793
ROA1_PANTR Pan troglodytes ENSPTRG00000005035 I 0.793
ENSOCUG00000023674 Oryctolagus cuniculus ENSOCUG00000023674 I 0.793
ENSCJAG00000019479 Callithrix jacchus ENSCJAG00000019479 I 0.793
HNRNPA1L2 Pan troglodytes ENSPTRG00000032520 I 0.793
Q6DTK6_HORSE Equus caballus ENSECAG00000008676 I 0.793
LOC100397230 Callithrix jacchus ENSCJAG00000018864 I 0.793
HNRNPA1 Homo sapiens ENSG00000135486 D 0.793
ENSFCAG00000010150 Felis catus ENSFCAG00000010150 I 0.793
XM_534786.2 Canis familiaris ENSCAFG00000006580 I 0.793
ENSMLUG00000000648 Myotis lucifugus ENSMLUG00000000648 I 0.793
HNRNPA1 Gorilla gorilla ENSGGOG00000003040 I 0.793
LOC710473 Macaca mulatta ENSMMUG00000007887 I 0.793
ENSG00000215492 Homo sapiens ENSG00000215492 I 0.793
LOC710473 Macaca mulatta ENSMMUG00000029402 I 0.793
ENSPVAG00000000322 Pteropus vampyrus ENSPVAG00000000322 I 0.793
LOC710473 Macaca mulatta ENSMMUG00000012989 I 0.793
ENSMGAG00000007630 Meleagris gallopavo ENSMGAG00000007630 I 0.787
ENSGGOG00000025381 Gorilla gorilla ENSGGOG00000025381 I 0.786
ENSOPRG00000006107 Ochotona princeps ENSOPRG00000006107 I 0.786
ENSOCUG00000010985 Oryctolagus cuniculus ENSOCUG00000010985 I 0.786
ENSPTRG00000018253 Pan troglodytes ENSPTRG00000018253 I 0.786
ENSOCUG00000022568 Oryctolagus cuniculus ENSOCUG00000022568 I 0.786
LOC100397230 Callithrix jacchus ENSCJAG00000004031 I 0.786
ENSGGOG00000025446 Gorilla gorilla ENSGGOG00000025446 I 0.786
ENSOCUG00000023444 Oryctolagus cuniculus ENSOCUG00000023444 I 0.786
Hnrnpa1 Dipodomys ordii ENSDORG00000010628 I 0.784
ENSSARG00000008946 Sorex araneus ENSSARG00000008946 I 0.784
ENSCAFG00000010153 Canis familiaris ENSCAFG00000010153 I 0.779
ENSOCUG00000021006 Oryctolagus cuniculus ENSOCUG00000021006 I 0.779
ROA1_MACMU Macaca mulatta ENSMMUG00000031613 I 0.779
ENSEEUG00000006130 Erinaceus europaeus ENSEEUG00000006130 I 0.779
HNRNPA1L2 Homo sapiens ENSG00000139675 D 0.779
ENSMLUG00000003232 Myotis lucifugus ENSMLUG00000003232 I 0.779
ENSLAFG00000026657 Loxodonta africana ENSLAFG00000026657 I 0.779
ENSMUSG00000021927 Mus musculus ENSMUSG00000021927 I 0.779
ENSOCUG00000021007 Oryctolagus cuniculus ENSOCUG00000021007 I 0.779
ENSCPOG00000021077 Cavia porcellus ENSCPOG00000021077 I 0.779
ENSOCUG00000028124 Oryctolagus cuniculus ENSOCUG00000028124 I 0.779
ENSOCUG00000023322 Oryctolagus cuniculus ENSOCUG00000023322 I 0.779
LOC100413454 Callithrix jacchus ENSCJAG00000009030 I 0.771
LOC100409067 Callithrix jacchus ENSCJAG00000003245 I 0.771
hnrnpa1 Xenopus tropicalis ENSXETG00000021277 I 0.771
hnrnpa3 Danio rerio ENSDARG00000059351 I 0.771
LOC710473 Macaca mulatta ENSMMUG00000007928 I 0.771
ENSLAFG00000030769 Loxodonta africana ENSLAFG00000030769 I 0.771
ENSOGAG00000009945 Otolemur garnettii ENSOGAG00000009945 I 0.771
LOC100410389 Callithrix jacchus ENSCJAG00000023392 I 0.771
ENSPPYG00000016683 Pongo pygmaeus ENSPPYG00000016683 I 0.771
AAH45260 Xenopus laevis AAH45260 I 0.764
XM_852631.1 Canis familiaris ENSCAFG00000023680 I 0.764
XM_854536.1 Canis familiaris ENSCAFG00000005046 I 0.764
CBU92546 Xenopus laevis CBU92546 I 0.764
CBF67672 Xenopus laevis CBF67672 I 0.764
AAH72090 Xenopus laevis AAH72090 I 0.764
ENSPPYG00000017853 Pongo pygmaeus ENSPPYG00000017853 I 0.764
D4A2D2_RAT Rattus norvegicus ENSRNOG00000021986 I 0.764
ENSCJAG00000031552 Callithrix jacchus ENSCJAG00000031552 I 0.764
ENSOCUG00000022668 Oryctolagus cuniculus ENSOCUG00000022668 I 0.764
ENSGACG00000009435 Gasterosteus aculeatus ENSGACG00000009435 I 0.764
AAA49741 Xenopus laevis AAA49741 I 0.757
AAA49742 Xenopus laevis AAA49742 I 0.757
CBF67555 Xenopus laevis CBF67555 I 0.757
P17130 Xenopus laevis P17130 I 0.757
ENSEEUG00000000494 Erinaceus europaeus ENSEEUG00000000494 I 0.757
CBU92428 Xenopus laevis CBU92428 I 0.757
ENSORLG00000008001 Oryzias latipes ENSORLG00000008001 I 0.757
ENSCAFG00000006784 Canis familiaris ENSCAFG00000006784 I 0.757
D4A491_RAT Rattus norvegicus ENSRNOG00000029531 I 0.757
ENSRNOG00000039436 Rattus norvegicus ENSRNOG00000039436 I 0.757
ENSCJAG00000009723 Callithrix jacchus ENSCJAG00000009723 I 0.755
LOC785445 Bos taurus ENSBTAG00000025621 I 0.752
ENSTNIG00000015047 Tetraodon nigroviridis ENSTNIG00000015047 I 0.750
Q1KKU4_FUGRU Takifugu rubripes ENSTRUG00000002190 I 0.750
ENSRNOG00000005951 Rattus norvegicus ENSRNOG00000005951 I 0.750
ENSTBEG00000016272 Tupaia belangeri ENSTBEG00000016272 I 0.745
ENSCJAG00000004902 Callithrix jacchus ENSCJAG00000004902 I 0.745
ENSCJAG00000035202 Callithrix jacchus ENSCJAG00000035202 I 0.743
XM_855847.1 Canis familiaris ENSCAFG00000006327 I 0.743
ENSRNOG00000033182 Rattus norvegicus ENSRNOG00000033182 I 0.739
ENSMMUG00000007695 Macaca mulatta ENSMMUG00000007695 I 0.738
ENSCJAG00000010169 Callithrix jacchus ENSCJAG00000010169 I 0.738
ENSCJAG00000032417 Callithrix jacchus ENSCJAG00000032417 I 0.736
HNRNPA3 Tetraodon nigroviridis ENSTNIG00000016958 I 0.736
D4A6Z0_RAT Rattus norvegicus ENSRNOG00000042924 N 0.733
ENSCAFG00000015319 Canis familiaris ENSCAFG00000015319 I 0.732
Q1KKS6_FUGRU Takifugu rubripes ENSTRUG00000017504 I 0.732
HNRNPA3 Oryzias latipes ENSORLG00000017561 I 0.732
ENSCAFG00000011035 Canis familiaris ENSCAFG00000011035 I 0.732
ENSETEG00000015332 Echinops telfairi ENSETEG00000015332 I 0.730
XP_541811.1 Canis familiaris ENSCAFG00000006586 I 0.730
ENSOCUG00000022627 Oryctolagus cuniculus ENSOCUG00000022627 I 0.730
ENSCJAG00000000095 Callithrix jacchus ENSCJAG00000000095 I 0.730
D3ZK54_RAT Rattus norvegicus ENSRNOG00000025482 I 0.730
ENSTTRG00000015563 Tursiops truncatus ENSTTRG00000015563 I 0.727
ENSCJAG00000001353 Callithrix jacchus ENSCJAG00000001353 I 0.725
HNRNPA3 Gasterosteus aculeatus ENSGACG00000004477 I 0.725
D4AD23_RAT Rattus norvegicus ENSRNOG00000025891 I 0.723
LOC100397230 Callithrix jacchus ENSCJAG00000014791 I 0.723
ENSCAFG00000019118 Canis familiaris ENSCAFG00000019118 I 0.720
ENSMLUG00000000788 Myotis lucifugus ENSMLUG00000000788 I 0.718
LOC100054206 Equus caballus ENSECAG00000006699 I 0.718
ENSCAFG00000020238 Canis familiaris ENSCAFG00000020238 I 0.718
ENSCJAG00000001737 Callithrix jacchus ENSCJAG00000001737 I 0.716
ENSCJAG00000007250 Callithrix jacchus ENSCJAG00000007250 I 0.716
ENSTBEG00000012511 Tupaia belangeri ENSTBEG00000012511 I 0.716
ENSRNOG00000011100 Rattus norvegicus ENSRNOG00000011100 I 0.716
ENSCJAG00000016375 Callithrix jacchus ENSCJAG00000016375 I 0.716
ENSMMUG00000031948 Macaca mulatta ENSMMUG00000031948 I 0.716
ENSPPYG00000001326 Pongo pygmaeus ENSPPYG00000001326 I 0.716
hnrnpa1 Danio rerio ENSDARG00000036675 I 0.714
ENSCAFG00000004202 Canis familiaris ENSCAFG00000004202 I 0.711
ENSGGOG00000025827 Gorilla gorilla ENSGGOG00000025827 I 0.709
D4A8U2_RAT Rattus norvegicus ENSRNOG00000007252 I 0.707
ENSRNOG00000030250 Rattus norvegicus ENSRNOG00000030250 I 0.707
ENSCAFG00000007879 Canis familiaris ENSCAFG00000007879 I 0.706
ENSCAFG00000019104 Canis familiaris ENSCAFG00000019104 I 0.704
ENSMICG00000009289 Microcebus murinus ENSMICG00000009289 I 0.704
ENSCAFG00000002059 Canis familiaris ENSCAFG00000002059 I 0.702
ENSRNOG00000021280 Rattus norvegicus ENSRNOG00000021280 I 0.702
ENSSTOG00000015259 Spermophilus tridecemlineatus ENSSTOG00000015259 I 0.702
XP_848548.1 Canis familiaris ENSCAFG00000016313 I 0.702
ENSCAFG00000005207 Canis familiaris ENSCAFG00000005207 I 0.702
ENSCJAG00000020672 Callithrix jacchus ENSCJAG00000020672 I 0.702
ENSCAFG00000014094 Canis familiaris ENSCAFG00000014094 I 0.702
ENSCJAG00000017130 Callithrix jacchus ENSCJAG00000017130 I 0.702
ENSOCUG00000006431 Oryctolagus cuniculus ENSOCUG00000006431 I 0.700
ENSCJAG00000033784 Callithrix jacchus ENSCJAG00000033784 I 0.700